PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027092m
Common NameCICLE_v10027092mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 241aa    MW: 27289 Da    PI: 10.6077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027092mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-1260122355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 
                      ++h+e+ErrRR riN+ +++Lr++lP+++             ++ ++Ka++L k+++ +++Lq
  Ciclev10027092m  60 KKHSEAERRRRLRINDQYDNLRKILPNLVkvnnastkllVIVKQQVDKASVLAKTIKTVRELQ 122
                      68*************************999*******99888888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.20257121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1259136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1360130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-760126No hitNo description
PfamPF000105.1E-1060122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-963127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.55E-5158221No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-5159220No hitNo description
CDDcd048732.50E-4161206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVLLQQLERG VKPVQSYYNS MTYLKQLSLT QGSISSNIIC YPSLISKPIS KVEAKELAAK  60
KHSEAERRRR LRINDQYDNL RKILPNLVKV NNASTKLLVI VKQQVDKASV LAKTIKTVRE  120
LQRTVREQKA LCQVHEECVF PSEANELSLR NCNRDRGMLK VTLSCEDQPE LMSDLSRALR  180
SVKGRLVRAE MVPVGGRIKC VLWVQGFKGN EGMVMLKRAL NLVIDRPVSP GNSSKLRFYH  240
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426282.11e-176transcription factor bHLH131
TrEMBLV4SG061e-174V4SG06_9ROSI; Uncharacterized protein
STRINGXP_006426282.11e-175(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.12e-45bHLH family protein