PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027125m
Common NameCICLE_v10027125mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 330aa    MW: 38051.8 Da    PI: 9.272
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027125mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-131051243
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      i+ +  r +t+ kR+ g+ KKA+E  +LC++  +vii++++
  Ciclev10027125m 10 LIDKEKPRMITYQKRKRGLKKKAQEFATLCGVPTCVIIYGPR 51
                     5788889*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-11166IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-16151IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.058151IPR002100Transcription factor, MADS-box
CDDcd002664.24E-18281No hitNo description
PRINTSPR004042.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRGKLTLKL IDKEKPRMIT YQKRKRGLKK KAQEFATLCG VPTCVIIYGP RLNSRPGSVD  60
VEVWPKDHKE FMQVVNLYRD KAFTSVRGVK SQNLYDFFAD RNRKVYEKIV KIRKANFESK  120
FSSDLDEDFN NFSMHQLKGM LVVLDNNIDV ATRKLALIKG HHQNFGCYND NNNANNSAQV  180
LFQQPQPLAS HHVNMQLASY HHHEPIQMVS FDFNPVDNPT MMMMLMNGGD QIQLGCNTTA  240
LYNHHHPMQH AVYCDPVGAM IENRVMMNNP RAAMRFVGST MQQFQPFIEQ FPALPSPQFN  300
GFMVIMGSSQ ERKVVDMELE DRFIFYCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427876.10.0agamous-like MADS-box protein AGL82
TrEMBLV4SVC30.0V4SVC3_9ROSI; Uncharacterized protein
STRINGXP_006427876.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16227914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-24AGAMOUS-like 82