PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027184m
Common NameCICLE_v10027184mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ZF-HD
Protein Properties Length: 220aa    MW: 24899.1 Da    PI: 8.9555
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027184mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.62.2e-314094257
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     + vrYkeClkNhAa++Gg a+DGCgEfmps geeg++++lkC+AC+CHRnFHR+e 
  Ciclev10027184m 40 KVVRYKECLKNHAAAIGGSATDGCGEFMPS-GEEGSIESLKCSACNCHRNFHRKEI 94
                     679**************************9.999********************96 PP
2Homeobox15.72.5e-05152208153
                      TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +r Rt+ft+eq e + ++ e    + ++++++  ++  +++g++ r+ kvW +N ++
  Ciclev10027184m 152 KRFRTKFTQEQKEKMLSFAEradwRIQKLDESVVQQFCQEIGIKRRVLKVWMHNNKQ 208
                      789***********987666776678****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-294294IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-234294IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.5E-324394IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1374493IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.8E-30140213IPR009057Homeodomain-like
SuperFamilySSF466899.2E-20142212IPR009057Homeodomain-like
TIGRFAMsTIGR015658.0E-27151208IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNSSSSPPKE RQFIVLVNSS NSNGNIVVQD HEEEKNPCKK VVRYKECLKN HAAAIGGSAT  60
DGCGEFMPSG EEGSIESLKC SACNCHRNFH RKEIGCDAHY HHLHQQAMMM LSGNSGSAHS  120
ASDEKVERRG VVVGRPAPAD DDDHQKRMMM RKRFRTKFTQ EQKEKMLSFA ERADWRIQKL  180
DESVVQQFCQ EIGIKRRVLK VWMHNNKQSF AKKNSSSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-241522091875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426395.11e-164zinc-finger homeodomain protein 3
SwissprotO647223e-66ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLV4SLC91e-163V4SLC9_9ROSI; Uncharacterized protein
STRINGXP_006426395.11e-164(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-57homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]