PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027244m
Common NameCICLE_v10027244mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20018.9 Da    PI: 9.3829
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027244mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-221765149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     kr+e ks rqvtfskR++g++ KA+EL+vLC+aeva++i+s++ + +++
  Ciclev10027244m 17 KRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65
                     7899**************************************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.521969IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-26968IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-171131IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-2612100IPR002100Transcription factor, MADS-box
PfamPF003197.0E-231865IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEASKQKNKG LQKIEIKRVE RKSARQVTFS KRKKGLFNKA SELCVLCGAE VAIVIMSPHK  60
RAFTFGHPNP DDVLDRFLTG AGAESSLAAT TVEDEKLERL KQEYVELLKR LKEEEKKRDE  120
IAKKRGNDGA NGVFWWDQYS IDDMERDELE LYLKSLEKLK TSVKSKVDEL AAASQA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426786.21e-125agamous-like MADS-box protein AGL62
TrEMBLV4SSA61e-124V4SSA6_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006426786.11e-125(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3327422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62