PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027270m
Common NameCICLE_v10027270mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WOX
Protein Properties Length: 292aa    MW: 31853.6 Da    PI: 6.8676
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027270mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-193191256
                     T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
         Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                     ++R+t+t++q+++L+el+++   r p+ae++++++++l    +++ ++V++WFqN +a+e+
  Ciclev10027270m 31 CPRWTPTTDQIRILKELYYNngVRSPTAEQIQKISARLrqygKIEGKNVFYWFQNYKARER 91
                     58****************98678************************************98 PP
2Wus_type_Homeobox107.39.6e-353094265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++RWtPt++Qi+iL+ely+ +G+r+P++e+iq+i+a+L++yGkie+kNVfyWFQN kaRer k+
    Ciclev10027270m 30 TCPRWTPTTDQIRILKELYYnNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94
                       579***************9779****************************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-102094IPR009057Homeodomain-like
PROSITE profilePS500719.6532793IPR001356Homeobox domain
SMARTSM003891.2E-42997IPR001356Homeobox domain
CDDcd000862.46E-73294No hitNo description
Gene3DG3DSA:1.10.10.601.1E-63291IPR009057Homeodomain-like
PfamPF000462.2E-163291IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEPQQQQNQH QGNGACGGSG KGNNCHCRPT CPRWTPTTDQ IRILKELYYN NGVRSPTAEQ  60
IQKISARLRQ YGKIEGKNVF YWFQNYKARE RLKKKIEGSS TSAADNLPMH QRPAAATNWK  120
PEDFANKSRS QSITSAGVSA TLPSYSVYTG GQMGDHGYGP VTMEKNFRDC SISSTGSSVV  180
GGSRSQNYGW VGIDPHTSSY IFFGQKNSAD GNQGNDKEDE EDEENGHPGI ETLPLFPMHG  240
EDSINDYWNS KPNSSSYYSG WYGSNDGSST SSSASLELSL NSYTSGSSGS I*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0325330.0EU032533.1 Citrus sinensis WUSCHEL-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425500.10.0protein WUSCHEL
SwissprotQ8LL114e-73WUS_PETHY; Protein WUSCHEL
TrEMBLV4SIU70.0V4SIU7_9ROSI; Uncharacterized protein
STRINGXP_006425500.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-35WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]