PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10027508m

Common Name

CICLE_v10027508mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YB

Protein Properties

Length: 227aa MW: 24895.5 Da PI: 6.534

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027508m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	180.5	1.5e-56	17	112	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl+kyre+eg Ciclev10027508m 17 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEG 110 79******************************************************************************************** PP NF-YB 96 ek 97 ek Ciclev10027508m 111 EK 112 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.8E-55	14	140	IPR009072	Histone-fold
SuperFamily	SSF47113	9.73E-42	19	131	IPR009072	Histone-fold
Pfam	PF00808	2.0E-27	22	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.1E-19	50	68	No hit	No description
PROSITE pattern	PS00685	0	53	69	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.1E-19	69	87	No hit	No description
PRINTS	PR00615	1.1E-19	88	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
NQTSPIGSPT SGNISDKEQD RFLPIANVSR IMKKSLPANA KISKEAKETV QECVSEFISF 60 ITGEASDKCQ REKRKTINGD DLLWAMTTLG FENYVGPLKI YLNKYRETEG EKNSMARQED 120 QAANPNPSHA AAAEINKANN SFSSSDNKAD FQNFNMGFYS LGAQVAPNSN GEGTRVMGYG 180 ENLGVEAFNL SRIYDNRDGN GGNRSAMAAH YNYCLLKFSF SAFTYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-48	17	107	2	92	Transcription factor HapC (Eurofung)
4g92_B	5e-48	17	107	2	92	Transcription factor HapC (Eurofung)
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006493850.1	1e-155	nuclear transcription factor Y subunit B-3-like
Refseq	XP_024037043.1	1e-155	nuclear transcription factor Y subunit B-3
Swissprot	O23310	9e-65	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	V4SKW9	1e-167	V4SKW9_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006428057.1	1e-168	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20563	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-67	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Ciclev10027508m
Entrez Gene	18036966

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]