PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027548m
Common NameCICLE_v10027548mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 206aa    MW: 23185.4 Da    PI: 9.0636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027548mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17126175255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r++   grW+AeIrdp+    r  r++lg+f+t e Aa+a+++a+ +++g
  Ciclev10027548m 126 KYRGIRQRQ-CGRWAAEIRDPR----RaVRVWLGTFDTDEAAARAYDRAAIEFRG 175
                      8*****999.7*********82....48************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.3E-36126189IPR001471AP2/ERF domain
PROSITE profilePS5103223.841126183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-30126184IPR001471AP2/ERF domain
PfamPF008474.4E-12126175IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-21126185IPR016177DNA-binding domain
CDDcd000181.49E-20127185No hitNo description
PRINTSPR003671.4E-8127138IPR001471AP2/ERF domain
PRINTSPR003671.4E-8149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MENSSRSSQL KALVNREEEH NVMVSTLKHV ITGHIIAIDE HQAATLSFSS NGKGMEENEQ  60
VSCTMAMLTL PDAVTCQVCE INGCLGCNLF PPSEEYCTTP TPGTSNENEV IMKNEKKKKK  120
KKKKNKYRGI RQRQCGRWAA EIRDPRRAVR VWLGTFDTDE AAARAYDRAA IEFRGLKAKL  180
NFPLSDYIAK NYSEPEQRSK FKPPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19127184361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123KKKKKKKKK
2117123KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425888.11e-155ethylene-responsive transcription factor ERF109
SwissprotQ9SZ061e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLV4RWD31e-153V4RWD3_9ROSI; Uncharacterized protein
STRINGXP_006425888.11e-154(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.14e-30redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]