PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027889m
Common NameCICLE_v10027890mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 736aa    MW: 78877.7 Da    PI: 6.2995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027889mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.3e-16469515455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Ciclev10027889m 469 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.62E-17461519No hitNo description
Gene3DG3DSA:4.10.280.103.6E-20462523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-20462527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349465514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13469515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MPLFELYQMT KEKLDSAKQK NPSSSTDLSF EPENDLVELV WENGQILKQG QSSRTKKSPT  60
SNSLPSYCLR SHTPKNRDKD LGKTGKFGTV DAMLNGIQMS DPSGEMGLNQ DDDMVPWLNY  120
AVDESLQQDY CSDFLHELSG VTGNELSSQN NFASFDKRSS SNQFDREFNS VFGNHGARLE  180
HGNVSKVSSV GGGEATRPRS STNSVYTSSS QQCQTSLPNL RSGVSDSTSN GIKNSTDNGI  240
FQGSNPTATG NLSGLKLHKQ DQRLSANNSG VMNFSHFARP VALVRANLQN IGSMPGARLS  300
RIERMGSKDK SSVASRSPVE SPLIDSSGCL RKESSCQPAA VTSKVDVKPQ EAKSSEQPVS  360
EPPEAACRED ALNNDKKPSQ VHAESATKGV VESEKTVEPV VAASSVCSGN SVERASDDLP  420
HNVKRKHCDL DDSECPSEEQ DVEEESVGVK KQVPGRVGTG SKRSRAAEVH NLSERRRRDR  480
INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGFYMP PMMYPSGMQH  540
MHAAHMAHFP PMGIGMGMGI GYGMGMPDIN GGSSCYPMVQ VPAMHGAHFP GTSVSGPSAL  600
QGMAGSNFQL LGLPAQGHHM SMPHAPLNPL SGGPIMKSAM GLNPTGMVGS MDNTDAAKGS  660
TSKDLVQNVN SQVKQNTGAK GPVDQASGQC EATNESSAEP AAVQDNCQAS EVNGLVTYNS  720
SRKNENESSN PAFFE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1473478ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423962.10.0transcription factor PIF3
RefseqXP_006480339.10.0transcription factor PIF3
TrEMBLV4SJJ60.0V4SJJ6_9ROSI; Uncharacterized protein
STRINGXP_006480339.10.0(Citrus sinensis)
STRINGXP_006423961.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-54phytochrome interacting factor 3