PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028399m
Common NameCICLE_v10028399mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 459aa    MW: 52330.3 Da    PI: 6.3937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028399mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1694181196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k++++s+v+   +l lp +f++ ++   + ++  ++e+esg+++++++     s+r+ l++GWk F +an+L egD++vF+l++ ++f  + 
  Ciclev10028399m  94 FWKAMVKSNVSHGFWLHLPMRFCKFNMP--KIDTVFIVENESGEEYKINY----ISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRF--KA 179
                      6799*******************88863..477899**************....566778***********************9876666..44 PP

                      EE CS
               B3  95 kv 96 
                       +
  Ciclev10028399m 180 YI 181
                      44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1888185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-2289186IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-2192183No hitNo description
PfamPF023621.2E-1494181IPR003340B3 DNA binding domain
PROSITE profilePS5086312.98594185IPR003340B3 DNA binding domain
SMARTSM010192.1E-1994185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEEQSEPETP LLQTTKIKRK KTAESKMKLT QVSEKPLDPD SAPELGAFDS SKESKSRRKR  60
AMIDDLYDHA KVNSPVIERA EEVRANLAPS YPSFWKAMVK SNVSHGFWLH LPMRFCKFNM  120
PKIDTVFIVE NESGEEYKIN YISQRTALSG GWKAFSDANQ LYEGDVLVFH LVEPTRFKAY  180
IVRANGFGNV NADAKPLNSV PMDDELEVAP KDHSEKRVKK NKRAKRVKPP PGFHRDNNQS  240
NSLMLLETNN GHVEDQFNND TEDLGPNKVL PHSESSNFKE MKSIDDFTIL VDGLAIDCEL  300
SDQHRNKYYD LCCSQNSFLH DHLLKSINCK LAAEIITQTV NIAEAIRACN LSTSRADYEI  360
WDKTLKGFEL LGMNVGFLRA RLNRLMSLAF ESEESEVSKR LREVSAEQAR AEEEMRSLEL  420
KLLRLKETMG RLDSEVESLK VKAEKHELKF QEEANAPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.200800.0abscission zone| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423044.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLV4UAJ30.0V4UAJ3_9ROSI; Uncharacterized protein
STRINGXP_006423044.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167171012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-33B3 family protein