PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028501m
Common NameCICLE_v10028501mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 427aa    MW: 48437.3 Da    PI: 8.2356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028501mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.2e-1337121797
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++ l  + l++p+kf++++g +   s+  +l+ +sgr W v+l  rk  ++ ++  GW eF +   +++g f++F+++g+s+f  +v ++
  Ciclev10028501m  37 VPSILHDKKLRIPNKFVKKFGDE--LSTVAKLTIPSGRLWLVEL--RKLNKKLWFDIGWHEFIEHCSIRAGYFMIFRYQGNSDF--NVYIY 121
                      345555667*********99865..8999***************..999999********************************..66665 PP
2B370.81.8e-22309402198
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+ vl ps+v ks +l +p  fa+++ +g+   + ++tl+ ++g++W+v++    ++g+  +++GW+eFv +n+L+e D++vF+l+++++ +l+
  Ciclev10028501m 309 FKVVLRPSYVYKSLLLHIPSIFARTYlNGI---QGDVTLTGPNGKQWRVRC--ISQKGKAKFGQGWSEFVWENNLDESDVCVFELIKTDDVTLK 397
                      778999********************8544...237***************..566666779******************************** PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v++fr
  Ciclev10028501m 398 VTIFR 402
                      ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2026122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-1930122IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-1431122No hitNo description
PROSITE profilePS5086312.5231124IPR003340B3 DNA binding domain
SMARTSM010192.4E-1032124IPR003340B3 DNA binding domain
PfamPF023621.1E-1038121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-26302402IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-25304405IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-22307402No hitNo description
SMARTSM010191.7E-19309404IPR003340B3 DNA binding domain
PROSITE profilePS5086314.621309404IPR003340B3 DNA binding domain
PfamPF023621.0E-20309402IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSEQQTTHGE AMSQPLAPYL PEEENQKRSC IFYKLIVPSI LHDKKLRIPN KFVKKFGDEL  60
STVAKLTIPS GRLWLVELRK LNKKLWFDIG WHEFIEHCSI RAGYFMIFRY QGNSDFNVYI  120
YDLANSEIEY PCNTCSSLEE EPSGNKKCPV PIDKDKEEDN SFGISQPLSS PCPVLFSSTI  180
NVEEEGAYCK KHKNSTSGVK SEYLHLAEEV HNQEATFQSP QDKGIIQFKS NVTNKLDEVG  240
LYFSGGTKRK ISGPGQITDS CKHKLEPVEL PKGRTSCKTY MRRGRALTSE EKKSALRAAE  300
IFKSDNPCFK VVLRPSYVYK SLLLHIPSIF ARTYLNGIQG DVTLTGPNGK QWRVRCISQK  360
GKAKFGQGWS EFVWENNLDE SDVCVFELIK TDDVTLKVTI FRVLQDPRPE ECHTSKKLES  420
AMSVTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-3928340323142B3 domain-containing transcription factor VRN1
4i1k_B6e-3928340323142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479394.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_024035722.10.0B3 domain-containing transcription factor VRN1
TrEMBLV4RPL80.0V4RPL8_9ROSI; Uncharacterized protein
STRINGXP_006423108.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-80B3 family protein