PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028782m
Common NameCICLE_v10028783mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 342aa    MW: 37621 Da    PI: 7.5014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028782mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-0960109154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +v+ +k+L
  Ciclev10028782m  60 RKMQKADREKLRRDRLNEHFTELGNALDPD----RPKNDKATILADTVQLLKDL 109
                      5778899********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.06559109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-1359132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1359128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-860114No hitNo description
PfamPF000101.6E-760109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-765115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDPQLKNEAA LVQSIPPPNP TLLEYRQPQP PPDPRVPTTR PQSKSSQKNE GEVKDCAATR  60
KMQKADREKL RRDRLNEHFT ELGNALDPDR PKNDKATILA DTVQLLKDLT SQVEKLKTEH  120
AALTEESREL TQEKNDLREE KLSLRSEIEN LNIQYQQRVR AMVPWAAMDH SVMMAPPSYP  180
YPVPMPMPPG AIPMHPPMQP YPMFGNQNPG VIPNPCSTFV PYMAPNTLVE QQSAQYASAV  240
AQPSGRSQGS AKEDSGNKSS GESKIEKNED SNNVTTDLEL KTPGSTTDQD LPSGQRKSKK  300
SLRKENSFTN GSSSSRCSSS RSVQDSSSNS VAGGRKADDL G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.50730.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423596.10.0transcription factor bHLH121
SwissprotQ9LT231e-100BH121_ARATH; Transcription factor bHLH121
TrEMBLV4SIH40.0V4SIH4_9ROSI; Uncharacterized protein
STRINGXP_006423595.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.23e-84bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]