PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028860m
Common NameCICLE_v10028860mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 316aa    MW: 35160 Da    PI: 5.7903
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028860mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.2e-19234267134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+C+t kTp+WR gp g+ktLCnaCG++y++ +
  Ciclev10028860m 234 CSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGR 267
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.0E-7722313IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-13228278IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-15231291No hitNo description
PROSITE profilePS5011411.622232264IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.4E-15232265IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.82E-14233284No hitNo description
PfamPF003209.4E-17234267IPR000679Zinc finger, GATA-type
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEFCMEARAF KPSLRRELSC CLKSTQQVFF DDIPCVSNED FSVDDLLDFS NGDFEDGSVD  60
DKDYFSSPDP VDDDNNSNSG SFSSEQSLLT NEFVEPVDDF AELEWVSQFV DDSSCSELSL  120
LYPNYVERTR SEPNGKPVSN KTSTNPTTTS PCFPLRVPSK ARTKRTRRSG RAWSSGSPLS  180
TESTISSSSS TSCLIFTDSV QNIEWFSGFD EPVVKKPKKK PAVQSGGGLF QRRCSHCQTQ  240
KTPQWRTGPL GPKTLCNACG VRYKSGRLFP EYRPACSPTF SVDMHSNSHR KVLEMRRKKE  300
SAGPDVGLSH MVQSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213220VKKPKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423461.10.0GATA transcription factor 5
TrEMBLV4SI660.0V4SI66_9ROSI; GATA transcription factor
STRINGXP_006423461.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-50GATA transcription factor 5