PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028901m
Common NameCICLE_v10028901mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 309aa    MW: 34781.9 Da    PI: 8.8358
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028901mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.1e-1227814098
                     ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +++g +W+v +  +k +g+++l +GW +Fvk++ +++  f+vFk+ ++s+f   v +f+
  Ciclev10028901m 27 TPNGCVWQVGV--TKDKGKILLDDGWHDFVKDHSICVAYFLVFKYAKNSTF--DVLIFD 81
                     5899*******..********************************999998..888876 PP
2B344.62.5e-142183031199
                      HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++++l +p kf++++  + +   +k ++++ ++gr+W+++ +y+ + g+  l++GW +Fv + +L+ gD+++F l++ ++  ++v+vf++
  Ciclev10028901m 218 RRKACLFIPIKFVNNYlcK-V---PKFIKVQASDGREWSIQTRYSHT-GALHLSGGWPGFVVDINLDRGDICIFGLIKMDDVIMKVSVFSA 303
                      46678********999632.3...446***************76555.467899***********************98888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.729183IPR003340B3 DNA binding domain
CDDcd100172.02E-10981No hitNo description
Gene3DG3DSA:2.40.330.104.6E-151085IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0251283IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-142689IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-92780IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16202304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-17202303IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-11207302No hitNo description
PROSITE profilePS5086312.872208304IPR003340B3 DNA binding domain
SMARTSM010192.1E-4209304IPR003340B3 DNA binding domain
PfamPF023624.5E-12217303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAGSRATEPF RFFRVILPSI LEQKKLTPNG CVWQVGVTKD KGKILLDDGW HDFVKDHSIC  60
VAYFLVFKYA KNSTFDVLIF DMTACEIDYA YHRGQPNKEK QNSIHDDKMQ CENSTKKLGS  120
RASCKNQMHH SQGSFHRKRL LNGTAGNFSG PSSAAQDDHQ TEFVDGQALS ALLEEMGISI  180
SRSCLSLEAE ERQRVITAAR LFEPRNPSFM VIVRGNERRK ACLFIPIKFV NNYLCKVPKF  240
IKVQASDGRE WSIQTRYSHT GALHLSGGWP GFVVDINLDR GDICIFGLIK MDDVIMKVSV  300
FSASKECK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-2218630526144B3 domain-containing transcription factor VRN1
4i1k_B3e-2218630526144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.204940.0abscission zone
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479391.10.0B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_024034934.10.0B3 domain-containing transcription factor VRN1
TrEMBLV4RPM00.0V4RPM0_9ROSI; Uncharacterized protein
STRINGXP_006423113.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3331622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-39B3 family protein