PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028930m
Common NameCICLE_v10028930mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 304aa    MW: 33549.7 Da    PI: 7.9049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028930mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20150199255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  Ciclev10028930m 150 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAVEFRG 199
                      59*******.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.53E-32149207No hitNo description
SMARTSM003804.7E-38150213IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23150208IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-33150207IPR001471AP2/ERF domain
PROSITE profilePS5103225.277150207IPR001471AP2/ERF domain
PfamPF008474.5E-14150199IPR001471AP2/ERF domain
PRINTSPR003672.9E-12151162IPR001471AP2/ERF domain
PRINTSPR003672.9E-12173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQRSSKRQRF CAVSAAHNPP PSPPPRRLTQ EQELAIMVAA LENVVVGNTD NDFSTDIFRF  60
QDWTASNAAA IASTSTSYNN HNTNFGNAML PPADTCQVCN IQGCLGCNYF PPNNNHYPHQ  120
QQQPQQQQHQ RQKKAAAGSS GAGKRRGKKN YRGVRQRPWG KWAAEIRDPR RATRVWLGTF  180
NTAEEAARAY DKAAVEFRGP RAKLNFPFPD STTVATAYEQ QQQGESSHSQ QPQQVVSQDS  240
NQSVARTNNN NGNSAAATEA MGDQIQSDFW EMIGEDEIQQ WMTMMDFGTD SSDSANTATG  300
LTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-22138207472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.206550.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920422e-75KR492042.1 UNVERIFIED: Citrus sinensis clone 151-4g mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423025.10.0ethylene-responsive transcription factor ERF109
TrEMBLV4SBR50.0V4SBR5_9ROSI; Uncharacterized protein
STRINGXP_006423025.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-32redox responsive transcription factor 1