PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028984m
Common NameCICLE_v10028984mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 288aa    MW: 33355.1 Da    PI: 7.7322
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028984mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.6e-20185278198
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f  +l ps+v ++ +l +p +fa+++ +g+k     +t+ d++g++W v++i+++++ +  ++kGW eFv +n+L+e D++vF+l+++++ +l+
  Ciclev10028984m 185 FRVILRPSYVYRTLLLHVPTSFARKYlNGIKG---YITIIDSNGKQWPVRCIFKNGGAK--FSKGWPEFVWENNLDESDVCVFELIKSNDVTLK 273
                      667899********************866643...59999***********99888866..89***********************99999999 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                       ++fr
  Ciclev10028984m 274 ATIFR 278
                      99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.011152IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-9259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-9250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-24177278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-24180281IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-20183278No hitNo description
SMARTSM010192.3E-15185280IPR003340B3 DNA binding domain
PROSITE profilePS5086314.367185280IPR003340B3 DNA binding domain
PfamPF023621.3E-18185278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MWFVELKKCN KQLWFDIGWH EFIEHCSIHS GYFLIFKYQG NSNFNVYIFD LAISEIEYPS  60
LEEPSDSKQC HVPIEKDKEK NSSLRILPPL RAPCPDPFSP ATKVLDEGVC YKCNKDSTSG  120
VKIEYLHIPK DEHNQETAFH CPQDKGIQFK NTSDEVGLRW RAVTTEEKKR TVHAAEMYKS  180
NNPLFRVILR PSYVYRTLLL HVPTSFARKY LNGIKGYITI IDSNGKQWPV RCIFKNGGAK  240
FSKGWPEFVW ENNLDESDVC VFELIKSNDV TLKATIFRVL EDARPVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-4415428118144B3 domain-containing transcription factor VRN1
4i1k_B2e-4415428118144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479393.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_024035723.10.0B3 domain-containing transcription factor VRN1
TrEMBLV4UAQ60.0V4UAQ6_9ROSI; Uncharacterized protein
STRINGXP_006423109.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-68B3 family protein