PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029072m
Common NameCICLE_v10029072mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 266aa    MW: 30639.7 Da    PI: 9.7275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029072mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-16129218198
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k +++s+v+   +l lp +f++eh     +++  +tl de+ +++  k+  +k++    l++GW++F  +++L +gD +vF+l++  +f  +
  Ciclev10029072m 129 FVKPMLQSHVTGGFWLGLPVHFCKEHlP---HSDEIVTLVDEEENEFPTKYLAEKTG----LSGGWRGFSIDHELVDGDCLVFQLIKPATF--K 213
                      89************************42...34557***************555555....***********************9986555..8 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v ++r
  Ciclev10029072m 214 VYIIR 218
                      87776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-21122218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-24122218IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-26127218No hitNo description
PfamPF023622.3E-14129218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082129220IPR003340B3 DNA binding domain
SMARTSM010191.0E-20129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVESKLTYEE CRRQRMEENK KRMEELKLNV LARSLKTPVS KPSPVKKRVS KPKPASAPVR  60
RSSRVADKPP PNYNEDPFEP FLTRRRLTCR SYQRRNLLNR VYASDEERAS AIDRADEVQS  120
GLDSQYPSFV KPMLQSHVTG GFWLGLPVHF CKEHLPHSDE IVTLVDEEEN EFPTKYLAEK  180
TGLSGGWRGF SIDHELVDGD CLVFQLIKPA TFKVYIIRVY VSEFNDDNND VNKKNEKNNK  240
ENKEDSSARI TRSAKRTRSS NLFKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423041.10.0B3 domain-containing protein At3g19184 isoform X1
SwissprotQ1G3M37e-88Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLV4SGZ90.0V4SGZ9_9ROSI; Uncharacterized protein
STRINGXP_006423041.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-79B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]