PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029114m
Common NameCICLE_v10029114mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 254aa    MW: 29762.1 Da    PI: 8.5551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029114mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.5e-133544196
                     TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ++gr+W+vkl   k ++r+ +++GW++Fv +n + +g f+vF+++++s+f   v +
  Ciclev10029114m  3 PNGRVWRVKL--MKDGRRVSFGDGWQDFVASNSISVGYFLVFRYEKNSTF--QVLI 54
                     78********..9*******************************999999..5555 PP
2B344.33.2e-141672521698
                      EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++p +fa ++ +++ +s  ++l+ ++      rs +   i+++  g+++lt+GW +F   ++Lk+gD+++Fkl++r++  l ++vfr
  Ciclev10029114m 167 VYVPASFAYRFVNQNVKS--IKLRGSNAelnlpRSDKSVRIWWRDNGGFYLTRGWMKFSTHKNLKDGDICIFKLIDRKDVLLELSVFR 252
                      678999987775554554..7777766677888666666679*********************************9988889888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.36E-12156No hitNo description
PROSITE profilePS5086313.704158IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-17365IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-10355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-17370IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-13146252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-12148242IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.137152253IPR003340B3 DNA binding domain
PfamPF023622.8E-11166252IPR003340B3 DNA binding domain
CDDcd100172.04E-8200252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVPNGRVWRV KLMKDGRRVS FGDGWQDFVA SNSISVGYFL VFRYEKNSTF QVLIHDMTAC  60
EIDYPYSDEE SDEWSSEFED DMESEECVEI SKELFSSKCR CQSQKKSKVK GLFRNLLENM  120
GMYISEKSED FTVEESERAI KIVRSLKLKD PSFMVIFRKR EKPCREVYVP ASFAYRFVNQ  180
NVKSIKLRGS NAELNLPRSD KSVRIWWRDN GGFYLTRGWM KFSTHKNLKD GDICIFKLID  240
RKDVLLELSV FRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034997.10.0B3 domain-containing protein At1g49475 isoform X1
TrEMBLV4SA370.0V4SA37_9ROSI; Uncharacterized protein
STRINGXP_006424076.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3331922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-16B3 family protein