PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029124m
Common NameCICLE_v10029124mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 253aa    MW: 28352.5 Da    PI: 5.8598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029124mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.8e-201156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll+++v+++G ++W+ I++ ++ gR++k+c++rw + 
  Ciclev10029124m 11 KGPWSPEEDQLLLKLVQRYGARNWSVISKSIP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP
2Myb_DNA-binding58.81.2e-1865107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +T++Ede++++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Ciclev10029124m  65 TFTPDEDEIIIKAHARYGNK-WATIARLLN-GRTDNAIKNHWNST 107
                      69******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.63661IPR017930Myb domain
SuperFamilySSF466893.04E-329104IPR009057Homeodomain-like
SMARTSM007171.7E-171059IPR001005SANT/Myb domain
PfamPF002497.0E-201156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-261264IPR009057Homeodomain-like
CDDcd001672.53E-161355No hitNo description
SMARTSM007179.2E-1662110IPR001005SANT/Myb domain
PROSITE profilePS5129421.72763112IPR017930Myb domain
PfamPF002497.7E-1665107IPR001005SANT/Myb domain
CDDcd001672.33E-1265108No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2365111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDRDSVSERV KGPWSPEEDQ LLLKLVQRYG ARNWSVISKS IPGRSGKSCR LRWCNQLSPE  60
VEHRTFTPDE DEIIIKAHAR YGNKWATIAR LLNGRTDNAI KNHWNSTLKR KYAETTRSAL  120
AAGVDEDSED SDEREKKRSA VSVSGISCSP SGSDVSDSGL PVRVFESESR YNEVFDVSTD  180
LTLGLPVTEL KKCDSVSQQE NNSDDDKTSN TPSFGPEFLS VMQEMIRNEV RNYMEVAVRN  240
AGFKRTGINK ID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-4381111104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422932.10.0transcription factor MYB73
SwissprotO231601e-74MYB73_ARATH; Transcription factor MYB73
TrEMBLV4S6Y30.0V4S6Y3_9ROSI; Uncharacterized protein
STRINGXP_006422932.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-64myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]