PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029131m
Common NameCICLE_v10029032mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 251aa    MW: 28368.4 Da    PI: 5.7689
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029131mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM21.94.6e-07428125
              NAM  1 lppGfrFhPtdeelvveyLkkkveg 25
                     lppG+rF Pt+eelv++yL +k+e+
  Ciclev10029131m  4 LPPGYRFFPTEEELVSFYLINKLEE 28
                     79*******************9975 PP
2NAM89.18.1e-283311150128
              NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+++++++w+fF++r++++++g r++r+t+sgyWkatg+   v+s++++++g+kkt+vfykg+ap+g+kt+W mheyr+
  Ciclev10029131m  33 KCQGDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRA 111
                      5667788**********************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.9381138IPR003441NAC domain
SuperFamilySSF1019412.75E-413138IPR003441NAC domain
PfamPF023655.8E-245110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEELPPGYRF FPTEEELVSF YLINKLEELC GEKCQGDTEQ WFFFTPRQER EERGGRPSRT  60
TASGYWKATG SPGYVYSSDN RVIGVKKTMV FYKGKAPTGR KTKWKMHEYR AIEGASNPSS  120
AVIPKLRHEF SLCRIYVKSE SFRAFDRRPL EAARREEQPH GGGATTSAPN NIMVRGNGSN  180
TSFQDAIMCD GDVATTSAQN NIMGPRSSSP ETSYSGEDHS DYPETNLDNN WNIVADPQPP  240
LWDWEQLNWP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-30414120171NAC domain-containing protein 19
3swm_B3e-30414120171NAC domain-containing protein 19
3swm_C3e-30414120171NAC domain-containing protein 19
3swm_D3e-30414120171NAC domain-containing protein 19
3swp_A3e-30414120171NAC domain-containing protein 19
3swp_B3e-30414120171NAC domain-containing protein 19
3swp_C3e-30414120171NAC domain-containing protein 19
3swp_D3e-30414120171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.112750.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424205.10.0NAC domain-containing protein 90 isoform X2
SwissprotQ9FMR36e-75NAC90_ARATH; NAC domain-containing protein 90
TrEMBLV4SF220.0V4SF22_9ROSI; Uncharacterized protein
STRINGXP_006424204.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.28e-73NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]