PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029167m

Common Name

CICLE_v10029167mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GeBP

Protein Properties

Length: 246aa MW: 27614.3 Da PI: 10.2504

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029167m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	47.6	4.7e-15	25	121	5	98
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddi........dafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 r+++++Dei lL+ + + ++++ +s+s+ + + ++ +++s+ +k+++ q+++KirrL+ K++k+ + + ++++hdq f+ Ciclev10029167m 25 RVFTDSDEIRLLKIFKKLAEQNRSSSSSSTpnstitldSSSFNRINSSLGSKFTHAQITDKIRRLRVKYHKQARS-----KSLIKTPHDQALFK 113 9************999887777433322111112222457899*********************99998.....6789****** PP DUF573 91 lskkiWgs 98 +++ iWg+ Ciclev10029167m 114 IAQLIWGK 121 ****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.2E-15	25	120	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSSTPRKRKQ VATSPVSSPT SPNGRVFTDS DEIRLLKIFK KLAEQNRSSS SSSTPNSTIT 60 LDSSSFNRIN SSLGSKFTHA QITDKIRRLR VKYHKQARSK SLIKTPHDQA LFKIAQLIWG 120 KKKTNRKKEA KKVQNSASAD DEDEGEEQKN EQNEEREREG AELDEYPVLA GELSKYLPMN 180 LVWREALKSL GNDKLKEMND KWMLIGIEEA KIVSKKADLV KEQTQLIMKA LGDGTANGNE 240 YAGFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424433.1	1e-180	probable transcription factor At1g11510
TrEMBL	V4RSW9	1e-179	V4RSW9_9ROSI; Uncharacterized protein
STRING	XP_006424433.1	1e-180	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17149	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	5e-10	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Ciclev10029167m
Entrez Gene	18035384