PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029274m
Common NameCICLE_v10029274mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 212aa    MW: 22808.2 Da    PI: 7.4714
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029274mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.92.1e-3012113197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA  r+ +Pv+Gavg++++++++++q
  Ciclev10029274m  12 SCNGCRVLRKGCSENCMLRQSIqwigtPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQ 105
                      6********************************************************************************************* PP

           DUF260  90 lkaelall 97 
                      +++e +l 
  Ciclev10029274m 106 SAVERVLC 113
                      **998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.50411117IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-2512109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTCAERKKIN MSCNGCRVLR KGCSENCMLR QSIQWIGTPQ AQANATVFVA KFFGRAGLMS  60
FISAVPETQR PSLFQSLLYE AVGRTVNPVS GAVGLLWTGN WNVCQSAVER VLCGGPLQPL  120
PCSLAPELDD VSESAVNCTN NSPKDVITPP PKRKAVSDFQ DDLHLGLKPC LPEKLRAETP  180
SEESETTTSG TGSDNCCSEV AGEKKLLRLF L*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422841.11e-154LOB domain-containing protein 38
RefseqXP_006422842.11e-154LOB domain-containing protein 38
RefseqXP_024035294.11e-154LOB domain-containing protein 38
SwissprotQ9SN238e-65LBD38_ARATH; LOB domain-containing protein 38
TrEMBLV4SGB81e-153V4SGB8_9ROSI; Uncharacterized protein
STRINGXP_006422841.11e-154(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2310744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-64LOB domain-containing protein 38