PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029372m
Common NameCICLE_v10029372mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 181aa    MW: 20257.2 Da    PI: 10.193
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029372mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-16271031899
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +p +f++++++++  + tlt++  s rsW+vkl  + ++ +++l++GW +F ++n L + +f++F++dg+++f   v++f+k
  Ciclev10029372m  27 IPQEFLKHISKESSDKATLTVQ-GSARSWTVKL--SETGIGVFLQDGWLKFLRDNSLGDSEFLLFTYDGNMCF--SVQIFNK 103
                      9*****7776554444444444.477*******..**************************************..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-1813106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-2013106IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-1215104IPR003340B3 DNA binding domain
CDDcd100176.04E-1227102No hitNo description
PfamPF023621.2E-1327103IPR003340B3 DNA binding domain
PROSITE profilePS5086312.12527104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEKKWENQGH AAPCFYHVIL DGKVPQIPQE FLKHISKESS DKATLTVQGS ARSWTVKLSE  60
TGIGVFLQDG WLKFLRDNSL GDSEFLLFTY DGNMCFSVQI FNKNGCERIV AASDQVRMNQ  120
EFVGFTNGTG KGLPSQKSNK PKSMRKKKNL NCMVKSGFNV QASQTRENQD GRPKMKKPAM  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423085.11e-133B3 domain-containing protein Os01g0723500
RefseqXP_024035398.11e-133B3 domain-containing protein Os01g0723500
TrEMBLV4SBX51e-132V4SBX5_9ROSI; Uncharacterized protein
STRINGXP_006423085.11e-133(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.12e-15VERDANDI