PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029384m
Common NameCICLE_v10029384mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 174aa    MW: 20141.2 Da    PI: 5.8854
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029384mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.4e-1612102199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+   + +l+ + l++p +f++++g +       tl+ ++g +W+v l  ++ ++++++ +GW +Fvk + +    f+vF++ ++s+f   v
  Ciclev10029384m  12 FFKII--EETLQDKKLRIPVDFVKKFGDE--LCDVATLRVPNGCVWKVGL--TREGRKIWFNDGWHDFVKNHSILKDYFLVFEYAKNSTF--DV 97 
                      67777..78888999********999755..55699**************..********************************999999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       +f+k
  Ciclev10029384m  98 LIFDK 102
                      99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-236105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-228105IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-1710101No hitNo description
PROSITE profilePS5086313.32410103IPR003340B3 DNA binding domain
SMARTSM010192.8E-1312103IPR003340B3 DNA binding domain
PfamPF023623.0E-1312102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAESITAEPF RFFKIIEETL QDKKLRIPVD FVKKFGDELC DVATLRVPNG CVWKVGLTRE  60
GRKIWFNDGW HDFVKNHSIL KDYFLVFEYA KNSTFDVLIF DKTACEIEYT CAEPENEKQN  120
DGKKIKPRKV AYEDEYKFVA VLEEMGICIS GAYKFLSVEE RQRIICASRL VSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423112.11e-126B3 domain-containing protein At4g01580
TrEMBLV4S7E11e-124V4S7E1_9ROSI; Uncharacterized protein
STRINGXP_006423112.11e-125(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-28B3 family protein