PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029525m

Common Name

CICLE_v10029525mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YB

Protein Properties

Length: 144aa MW: 16240.4 Da PI: 6.7774

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029525m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	46.3	1e-14	11	104	6	94
NF-YB 6 rflPianvsrimkkvlPa...na..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++lP + v r++k l + ++ + kda e + fi ++++ a+d c++ kr+tin++d+l a+ ++ f ++v+pl+ l ++r+ + Ciclev10029525m 11 EELPKTIVRRVVKDKLHNcspDTdiSVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDEFRQKN 104 56888889999998875422233114567888888888999**************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-32	4	140	IPR009072	Histone-fold
Pfam	PF00808	4.3E-10	12	81	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.08E-25	13	119	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
METEKVVPEA EELPKTIVRR VVKDKLHNCS PDTDISVHKD ALLAFCESAR IFIHYLSATA 60 NDICKESKRQ TINAEDVLKA IEEIDFTEFV DPLRDSLDEF RQKNAGKRAG TSKSKEEKKK 120 QKVEGEASKK SCGKTEKDKK NEE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424230.1	2e-99	DNA polymerase epsilon subunit 3
TrEMBL	V4SF43	4e-98	V4SF43_9ROSI; Uncharacterized protein
STRING	XP_006424230.1	6e-99	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-46	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Ciclev10029525m
Entrez Gene	18034636