PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029669m
Common NameCICLE_v10029669mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 96aa    MW: 10661.1 Da    PI: 9.4192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029669mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10953344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+ E +l+ +a +++ ++   +W  Ia+ +g g+t +++k ++
  Ciclev10029669m  9 TWTPKENKLFEKALALYDKEtpdRWQNIAKAVGGGKTVEEVKKHY 53
                     7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.785561IPR017884SANT domain
SMARTSM007172.9E-9659IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-13864IPR009057Homeodomain-like
CDDcd001672.41E-7953No hitNo description
PfamPF002491.2E-8953IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-5958IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASGSLSSTW TPKENKLFEK ALALYDKETP DRWQNIAKAV GGGKTVEEVK KHYEILVDDL  60
NRIEAGRVPI PNYKSPGSSY NAANEERILK NLKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-31195193RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423283.11e-64protein RADIALIS-like 3
RefseqXP_006469147.11e-64protein RADIALIS-like 3
SwissprotQ1A1735e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A067E8G33e-63A0A067E8G3_CITSI; Uncharacterized protein
TrEMBLA0A2H5PY893e-63A0A2H5PY89_CITUN; Uncharacterized protein
TrEMBLV4RQ203e-63V4RQ20_9ROSI; Uncharacterized protein
STRINGXP_006469147.15e-64(Citrus sinensis)
STRINGXP_006423283.15e-64(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-37RAD-like 6