PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029805m
Common NameCICLE_v10029805mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SRS
Protein Properties Length: 222aa    MW: 24575.4 Da    PI: 8.4693
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029805mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702157.96.6e-4941414154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaa.saaeaaskrkrelkskkqsalsstklssaes 96 
                      g ++CqdCGnqakk+Ca++RCRtCCk rg++C+th+kstW+pa++r +r ++++    ++++ + + +++kr r                ++ s
  Ciclev10029805m   4 GVTRCQDCGNQAKKNCAYMRCRTCCKRRGYECETHIKSTWIPAYRRHQRYHHQHLVPVHEQHlQLQGHSPKRLR----------------ENPS 81 
                      6689********************************************97766655333322022222222222................3334 PP

           DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154
                      +  l++ ++P+e+ sea frcv+vss+dd+ +   laY+t++s+gGh+fkGiLy+qG e+
  Ciclev10029805m  82 SPGLQIGNFPAEITSEATFRCVKVSSIDDAIDRttLAYKTSISVGGHIFKGILYYQGCES 141
                      44788899*********************6554349*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.3E-506140IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.6E-26849IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.0E-2090138IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
AELGVTRCQD CGNQAKKNCA YMRCRTCCKR RGYECETHIK STWIPAYRRH QRYHHQHLVP  60
VHEQHLQLQG HSPKRLRENP SSPGLQIGNF PAEITSEATF RCVKVSSIDD AIDRTTLAYK  120
TSISVGGHIF KGILYYQGCE SNSNNNVGES SSSEPPPPPQ HQQQPYYPFT VAALTTTTAA  180
TTTTTTALAA ADETPYSSSF TYPFGSYVSA GTQFFPKYPN S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388465.11e-166protein SHI RELATED SEQUENCE 3
TrEMBLA0A2H5PKM11e-165A0A2H5PKM1_CITUN; Uncharacterized protein
STRINGXP_006423407.11e-165(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-45Lateral root primordium (LRP) protein-related