PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029815m

Common Name

CICLE_v10029815mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WOX

Protein Properties

Length: 249aa MW: 27672.9 Da PI: 6.7785

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029815m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5.1e-21	29	88	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq++ Le+l+++ r+psae++++++++l +++ ++V++WFqN++a++++ Ciclev10029815m 29 SRWNPTKEQINMLESLYAQgIRTPSAEQIQQITTRLraygHIEGKNVFYWFQNHKARQRQ 88 8***************99************************************97 PP
2	Wus_type_Homeobox	116.3	1.5e-37	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQi++Le+ly +G+rtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqkq Ciclev10029815m 27 SSSRWNPTKEQINMLESLYAQGIRTPSAEQIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQ 90 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.965	24	89	IPR001356	Homeobox domain
SMART	SM00389	7.2E-6	26	93	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-13	26	94	IPR009057	Homeodomain-like
Pfam	PF00046	9.1E-19	29	88	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-8	29	88	IPR009057	Homeodomain-like
CDD	cd00086	2.64E-6	30	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008284	Biological Process	positive regulation of cell proliferation
GO:0009942	Biological Process	longitudinal axis specification
GO:0010654	Biological Process	apical cell fate commitment
GO:0048825	Biological Process	cotyledon development
GO:0080167	Biological Process	response to karrikin
GO:0090451	Biological Process	cotyledon boundary formation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MEGDGDNNNN MDMVSGGGGG GGTTLSSSSR WNPTKEQINM LESLYAQGIR TPSAEQIQQI 60 TTRLRAYGHI EGKNVFYWFQ NHKARQRQKQ KQERTAFINR YLHKSAHQPA PLFPPSTNVV 120 CGPYYLPRND LGFYPQCTKV LIPGGSKMRA KTDQEMDKTT SYVGAGYDPE QPECNVMMHT 180 SNINNSDISN QETLPLFPLH PTGILQAKTN AMLPSNSLEN SITPCIEKDP ADQPFFDFFS 240 GQGCERTD*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the egg cell and the central cell of the embryo sac, but not in the synergids, the antipodals or the male gametophyte. After fertilization, it is expressed in the zygote. After the first division of the zygote, it is detected exclusively in the apical daughter cell, while WOX8 is expressed in the basal daughter cell. Subsequently, it is expressed in all cells of the 4-cell embryo proper and predominantly in the apical domain of the 8-cell embryo. However, in some 8-cell embryos it is also weakly expressed in the central domain suggesting that expression shifts to the most apical cells during this stage. Expression remains restricted to the apical domain in the 16-cell embryo and the early-globular stage. Not expressed in the apical domain thereafter. However, in heart stage embryos it is weakly expressed in a ring of epidermal cells approximately at the junction of hypocotyl and root. Not expressed in mature embryos, endosperm or postembryonically in inflorescences. {ECO:0000269\|PubMed:14711878}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269\|PubMed:14711878}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424801.2	0.0	WUSCHEL-related homeobox 2
Swissprot	Q6X7K1	9e-53	WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBL	V4SLT2	0.0	V4SLT2_9ROSI; Uncharacterized protein
STRING	XP_006424801.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6914	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	5e-48	WUSCHEL related homeobox 2

Link Out ? help Back to Top
Phytozome	Ciclev10029815m
Entrez Gene	18034685

Publications ? help Back to Top
Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development. Plant Cell Physiol., 2015. 56(9): p. 1855-66 [PMID:26220906] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce. BMC Plant Biol., 2016. 16: p. 19 [PMID:26786587] Zhang Z,Tucker E,Hermann M,Laux T A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells. Dev. Cell, 2017. 40(3): p. 264-277.e4 [PMID:28171749]