PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029882m
Common NameCICLE_v10029882mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 148aa    MW: 17153.7 Da    PI: 9.1951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029882mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-1158146598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++s+  +++ +++p kfa+e+ +   +   +++ed + r+ ++  ++r++ g++vl   W +  + n L+ gD+++F ++ r++f l+++vf+
  Ciclev10029882m  58 ILQSSDITHNAVYVPGKFANEFFSRDVK--SIKIEDDKKREHTLSNNWRRN-GGFVLL--WAKLMRNNSLQKGDICIFDFVPRNDFLLKLSVFS 146
                      45788888889***********655455..59999*999999999976666.578888..********************99999989888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-1247139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1250142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-853146No hitNo description
PROSITE profilePS508638.62854147IPR003340B3 DNA binding domain
PfamPF023627.0E-1057146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVEKNESDDY DEFDLWASLE EMGMCIARKE RTVTKEESRR AVKIARSLRP KIPSFMVILQ  60
SSDITHNAVY VPGKFANEFF SRDVKSIKIE DDKKREHTLS NNWRRNGGFV LLWAKLMRNN  120
SLQKGDICIF DFVPRNDFLL KLSVFSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423233.21e-105B3 domain-containing transcription factor VRN1
RefseqXP_015388396.11e-105uncharacterized protein LOC107178107
TrEMBLV4RPX81e-104V4RPX8_9ROSI; Uncharacterized protein
STRINGXP_006423233.11e-105(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-14B3 family protein