PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029941m

Common Name

CICLE_v10029941mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 160aa MW: 18508.2 Da PI: 10.368

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029941m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.1	2.5e-12	21	100	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++Y k++GFsvrk++ ++ ++ge+ +t k + + ++ ++ r++r +r gCk +l+v+ +k +gk++vtkl+ +H+H+l+ Ciclev10029941m 21 HKNYTKSIGFSVRKDELRHDGKSGETRIQT-------K-KMDGEN-RQVREPRGISRNGCKVELRVNYDKlKGKYVVTKLVVKHTHPLV 100 589**************97777443322.......2.222222.467899*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-9	21	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
EPIPVGVGSY FDTVNDAHVW HKNYTKSIGF SVRKDELRHD GKSGETRIQT KKMDGENRQV 60 REPRGISRNG CKVELRVNYD KLKGKYVVTK LVVKHTHPLV ELHETQFLRS QRVVNDVDLA 120 HAKALRQVRV KVCQFMNYKS DQARRHAEQN IRMPLCPNY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024039414.1	4e-63	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024042833.1	2e-63	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	V4SIH7	1e-115	V4SIH7_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006423601.1	1e-116	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-12	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10029941m
Entrez Gene	18033645