PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029989m
Common NameCICLE_v10029989mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 366aa    MW: 41387.2 Da    PI: 9.477
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029989mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-3271124255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  Ciclev10029989m  71 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 124
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-3067125IPR009057Homeodomain-like
PROSITE profilePS5129413.70267127IPR017930Myb domain
SuperFamilySSF466893.05E-1569125IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-2471126IPR006447Myb domain, plants
PfamPF002492.5E-972123IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MKESEIINDG LRMSLFKGDD HDNREGGEEE DDDESKTRTS ASSSNSVVEE GDQRKASSSS  60
GVRPYVRSKV PRLRWTPDLH RCFVQAVERL GGQERATPKL VLQLMNIKGL SIAHVKSHLQ  120
MYRSKKIDDH GQVFNSRGHL MGTSDHFSHN LWHHSTFQSI NKRIGRPNFS DASLIGHGNW  180
MLKPHMNIGG TVACFQGSVL NGNIHGGIGS NIRNEALYRT NNFAFAHQQR IGKPTDRHED  240
FQLPYGWRGT EERMKCVNYY PNPTAPNSNW RINDSEEQSR SKRKAQDDEL DLSLSLGTKM  300
RKEEFRRKAL RGDNQEEVAS NLLLSLSSST VTREIYAMNL KKNSRLKEGD DIINPKLAST  360
LDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1872126357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1872126357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1872126357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1872126357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388811.10.0uncharacterized protein LOC107178351
TrEMBLV4SHP80.0V4SHP8_9ROSI; Uncharacterized protein
STRINGXP_006425115.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-42G2-like family protein