PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029999m

Common Name

CICLE_v10029999mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 576aa MW: 65741.9 Da PI: 6.2478

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029999m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	359	7e-110	198	568	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL++cA+a s+d++ a +lL+++++++spdgd +qRla+yf+++L+arl+++ + ++ s+ts ++++l+a+ ++ +sP+ k s+ Ciclev10029999m 198 SSLLTQCAQAAVSNDHRVAIELLKQIRQHSSPDGDGTQRLAHYFANGLEARLSGTRTPYFSPAFISKTS---VADVLKAYIVYISASPFRKASN 288 689*************************************************777777666666666...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 +++N++I + +e++++vHiiDf+is+G+QWp+++q + Rp+gpp++RiTg++ pe+g +e++eetg+rL+k Ae+++vpfe+++ +a+++e Ciclev10029999m 289 FLTNRMIGKTTEKATKVHIIDFGISYGFQWPCFIQRQSFRPGGPPKIRITGIELPEPGfrPAERVEETGHRLKKAAERCNVPFEYSA-IAQKWE 381 *****************************************************9*************************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +++l++L+++++E+++V ++++l +l+d+++ +s rd+vL+l+k+++P+++v+ + +ns+ F+ rf ea+ ++salfd+lea++p+e++ Ciclev10029999m 382 TIKLDDLKIDRDEVTVVTCMYRLNYLPDDTQVKDSLRDAVLRLIKRINPDLFVHGVANGTYNSPFFVSRFKEAMFHFSALFDMLEATVPTEDQG 475 ****************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +Ere++gr+++nv+aceg er+ + et+++W++r +aGF+++p++++ +k ++++ + + + +e+ +++++gWk++ L+++S+W+ Ciclev10029999m 476 RLIYEREVFGRHAMNVLACEGLERIDNPETYRQWQSRNLRAGFRQLPVDQELLRRVKKMVKMDYHKDFDADENGQWMLQGWKGKILYALSFWK 568 ************************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.319	171	548	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-107	198	568	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MNEFMDHPTD HHLSINSAPS LASSSDGASR YNFENVNFSY AVFKYINDIL MEEDVASNTC 60 MLQDCLALQA TEKSFYDVLG QQYPPSPNQY SHCFNPNGNS PDDDIDCSSS IDNNNSCDAT 120 NNASDEEVRH YSLKGSRGRK IHQIDDRDFL DEGRSNKQLV PLLEEAERSD MFVEIKGSNS 180 RILRMMRQDN TSEVVDLSSL LTQCAQAAVS NDHRVAIELL KQIRQHSSPD GDGTQRLAHY 240 FANGLEARLS GTRTPYFSPA FISKTSVADV LKAYIVYISA SPFRKASNFL TNRMIGKTTE 300 KATKVHIIDF GISYGFQWPC FIQRQSFRPG GPPKIRITGI ELPEPGFRPA ERVEETGHRL 360 KKAAERCNVP FEYSAIAQKW ETIKLDDLKI DRDEVTVVTC MYRLNYLPDD TQVKDSLRDA 420 VLRLIKRINP DLFVHGVANG TYNSPFFVSR FKEAMFHFSA LFDMLEATVP TEDQGRLIYE 480 REVFGRHAMN VLACEGLERI DNPETYRQWQ SRNLRAGFRQ LPVDQELLRR VKKMVKMDYH 540 KDFDADENGQ WMLQGWKGKI LYALSFWKPV QDSQN*

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MNEFMDHPTD HHLSINSAPS LASSSDGASR YNFENVNFSY AVFKYINDIL MEEDVASNTC  60
MLQDCLALQA TEKSFYDVLG QQYPPSPNQY SHCFNPNGNS PDDDIDCSSS IDNNNSCDAT  120
NNASDEEVRH YSLKGSRGRK IHQIDDRDFL DEGRSNKQLV PLLEEAERSD MFVEIKGSNS  180
RILRMMRQDN TSEVVDLSSL LTQCAQAAVS NDHRVAIELL KQIRQHSSPD GDGTQRLAHY  240
FANGLEARLS GTRTPYFSPA FISKTSVADV LKAYIVYISA SPFRKASNFL TNRMIGKTTE  300
KATKVHIIDF GISYGFQWPC FIQRQSFRPG GPPKIRITGI ELPEPGFRPA ERVEETGHRL  360
KKAAERCNVP FEYSAIAQKW ETIKLDDLKI DRDEVTVVTC MYRLNYLPDD TQVKDSLRDA  420
VLRLIKRINP DLFVHGVANG TYNSPFFVSR FKEAMFHFSA LFDMLEATVP TEDQGRLIYE  480
REVFGRHAMN VLACEGLERI DNPETYRQWQ SRNLRAGFRQ LPVDQELLRR VKKMVKMDYH  540
KDFDADENGQ WMLQGWKGKI LYALSFWKPV QDSQN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-43	187	569	9	380	Protein SCARECROW
5b3h_A	1e-43	187	569	8	379	Protein SCARECROW
5b3h_D	1e-43	187	569	8	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488667.1	0.0	scarecrow-like protein 9
Refseq	XP_024035700.1	0.0	scarecrow-like protein 9
TrEMBL	V4SLY2	0.0	V4SLY2_9ROSI; Uncharacterized protein
STRING	XP_006424856.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	1e-167	GRAS family protein

Link Out ? help Back to Top
Phytozome	Ciclev10029999m
Entrez Gene	18035228