PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030003m
Common NameCICLE_v10030003mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GeBP
Protein Properties Length: 197aa    MW: 22702.2 Da    PI: 6.5613
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030003mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573766.7e-2427116597
           DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf..kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      ++w+ee ei +L Gli+f +k+g +p ++ ++f++++++s+ +  +++ sql +K+++L+kKfk++ +k      + +s++h++  felskkiW
  Ciclev10030003m  27 QVWTEEQEICILNGLIKFSTKKGIDPLKHKKRFFSYIRGSLAVeeEFTLSQLNDKLKSLQKKFKNNLNK-----GKGISTPHENRLFELSKKIW 115
                      79*************************************98652279**********************.....556999************** PP

           DUF573  97 g 97 
                      g
  Ciclev10030003m 116 G 116
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.6E-2227116IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDLENLIVAD SEDQDGQKVD KRSVQPQVWT EEQEICILNG LIKFSTKKGI DPLKHKKRFF  60
SYIRGSLAVE EEFTLSQLND KLKSLQKKFK NNLNKGKGIS TPHENRLFEL SKKIWGDDIK  120
CVPATTEANI EKFGELGENK IEQVLEQLGE AKRIEFKKEW DELQILELKL TVKRAELVQF  180
QSEIMLDAMM KKFATN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423929.11e-140transcription factor STKL2
RefseqXP_015386435.11e-140transcription factor STKL2-like
TrEMBLV4UD061e-138V4UD06_9ROSI; Uncharacterized protein
STRINGXP_006423929.11e-139(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.19e-08DNA-binding storekeeper protein-related transcriptional regulator