PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030007m
Common NameCICLE_v10030007mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 228aa    MW: 26094.7 Da    PI: 9.2678
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030007mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-1418951699
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      ++p  fa+++g++   +   tl+ ++gr+ +v l  +k ++ +++++GW eFv+ + +  g f+vFk++++s+f   v++f++
  Ciclev10030007m 18 RRIPPFFARKFGHE--LTDAATLTLPNGRQSQVSL--KKDGRNVWFRDGWHEFVEIHSITPGYFLVFKYEKNSRF--QVHIFDT 95
                     689********966..66689999999********..999999**************************999999..9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.5E-11496IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-191698IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-191698IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-121895IPR003340B3 DNA binding domain
CDDcd100178.74E-141994No hitNo description
PROSITE profilePS5086310.82096IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
VNACSSSRVG SDHAESPRRI PPFFARKFGH ELTDAATLTL PNGRQSQVSL KKDGRNVWFR  60
DGWHEFVEIH SITPGYFLVF KYEKNSRFQV HIFDTTACEI KYPCMSEESE NVKDEMVDSE  120
DCVEISKRLF AQKSSKWNCK FGASLENSKV KYKCDPGSKK RKKEELAEKN ESDELDLCDS  180
LGEMGIRVTK RRRISAEGRK RAIRIATSLK LKNPTFLVIL QPSDKNHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KKRKK
2189193KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423118.21e-169B3 domain-containing transcription factor VRN1
TrEMBLV4RPM51e-169V4RPM5_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006423118.11e-170(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-27B3 family protein