PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10030044m

Common Name

CICLE_v10030044mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 204aa MW: 22945.9 Da PI: 9.1693

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10030044m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	62.8	1.3e-19	29	106	4	78
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaess 78 k++ + ++h+kv+gRd RvR++ ++ arf +Lq+eLG++ +++ti+WLl+ p+ + s+++a+ +++++ Ciclev10030044m 29 KQRCNTDRHAKVDGRDCRVRVPELTLARFIQLQRELGHKNNGQTIQWLLNHVPPSHFPEPTVSNKTANPNpnpNPNND 106 566789*********************************************999876666554444433322222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.116	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.1E-15	33	115	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAPINLQLAK NSTQKKPKTR QLFKNPNNKQ RCNTDRHAKV DGRDCRVRVP ELTLARFIQL 60 QRELGHKNNG QTIQWLLNHV PPSHFPEPTV SNKTANPNPN PNPNNDNNNV SSSVSLVTAG 120 SFLHAALPIT STVETERMPE ESLEVEIHCH KHLSPVDIFK HLDCLYVRAT IHYFNGFETF 180 DTVGNRECLR SGRCFRSGQG SNC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024035684.1	1e-102	transcription factor TCP16
TrEMBL	V4SL44	1e-149	V4SL44_9ROSI; Uncharacterized protein
STRING	XP_006424521.1	1e-150	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33369	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-17	TCP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10030044m
Entrez Gene	18035259