PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030151m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 311aa    MW: 36986.3 Da    PI: 9.3529
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030151mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.31e-07265979
             FAR1  9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79
                     ++GF +++++  k k +ge+t+r fvCsk  +++ + k+       ra+tr +C+a++ +++ +++    +
  Ciclev10030151m  2 KLGFFIKRESYAKLKSTGEMTSRIFVCSKDKQDHWTIKA-------RAQTRSSCHAQMGINRLHRAIEDSI 65
                     68**************************99887776666.......9*************99876655544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
IKLGFFIKRE SYAKLKSTGE MTSRIFVCSK DKQDHWTIKA RAQTRSSCHA QMGINRLHRA  60
IEDSIEVMPN TYHKLCMWHM MQNALKHIRS VFNDKIEEEY DFFTTWNNML DEYDMHTNDW  120
LSSIFKLKEK WAFTYVRHVW SAGMKSTQLS KSFHASLKDY LKSDHNVSQF FMHFERVLKD  180
MRYKELEAKY ESCFRLVNTK ISVKILIQAR EVYTKKIFED FQDQWTKQAR FKSVQDINGR  240
EIQADPKLQQ TCRYRSMCSI FTRISNRASE SEKADNLTYL HASNLAKLVE NILQLEREGD  300
KEKEYELSPP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024198629.12e-72protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4RRW50.0V4RRW5_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006424043.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-21FAR1-related sequence 5