PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10030185m

Common Name

CICLE_v10030185mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 497aa MW: 54724.1 Da PI: 6.0154

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10030185m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	265	319	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl Ciclev10030185m 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.419	262	322	IPR017930	Myb domain
SuperFamily	SSF46689	4.3E-18	263	319	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-32	264	320	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.1E-26	265	320	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-10	267	318	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-21	354	400	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MNHHSIISVT KNESNKGVSQ SCCSALSPIH NFQTEGQSLS TGEYPFPHPS PFIRKESLSS 60 PNRMQASTVV PKENGLISTL DSPISPGSHF QHSKGGFSRS SVFCTSLYLS SSASSETHRQ 120 IGNFPFLPHP RTFNQSVSAV DSTKSSLLFS EDMGNAYQEE HSESLMKGFL NFPEDASDGS 180 FPGVTCMGER LGLNEHLELQ FLSDELDIDI TDHGENPRLD EIDDAPKSSL EPPMGLSCNE 240 NYVSSAPPVD ALSSHTSPAS ATAHKPRMRW TPELHECFVE AVNKLDGPEK ATPKAVLKLM 300 NVEGLTIYHV KSHLQKYRLA KYMPEKKEEK KTCSSEEKKA TSSIESDGRK KGSIQFTEAL 360 RMQMEVQKQL HEQLEVQRAL QLRIEEHARY LEKIVAEQQK DGSATILPQA QSLSTITNGS 420 KDSEQQPSPP SFTVSAILSP EQPAESKTES SSTSLLSKHK ATDSRESKPD ACLKRIRLEN 480 KPEITSDEAV VENPVQ*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MNHHSIISVT KNESNKGVSQ SCCSALSPIH NFQTEGQSLS TGEYPFPHPS PFIRKESLSS  60
PNRMQASTVV PKENGLISTL DSPISPGSHF QHSKGGFSRS SVFCTSLYLS SSASSETHRQ  120
IGNFPFLPHP RTFNQSVSAV DSTKSSLLFS EDMGNAYQEE HSESLMKGFL NFPEDASDGS  180
FPGVTCMGER LGLNEHLELQ FLSDELDIDI TDHGENPRLD EIDDAPKSSL EPPMGLSCNE  240
NYVSSAPPVD ALSSHTSPAS ATAHKPRMRW TPELHECFVE AVNKLDGPEK ATPKAVLKLM  300
NVEGLTIYHV KSHLQKYRLA KYMPEKKEEK KTCSSEEKKA TSSIESDGRK KGSIQFTEAL  360
RMQMEVQKQL HEQLEVQRAL QLRIEEHARY LEKIVAEQQK DGSATILPQA QSLSTITNGS  420
KDSEQQPSPP SFTVSAILSP EQPAESKTES SSTSLLSKHK ATDSRESKPD ACLKRIRLEN  480
KPEITSDEAV VENPVQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	265	322	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425193.1	0.0	myb family transcription factor PHL6
Refseq	XP_024034679.1	0.0	myb family transcription factor PHL6
Swissprot	Q949U2	1e-135	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	V4RUQ0	0.0	V4RUQ0_9ROSI; Uncharacterized protein
STRING	XP_006425193.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-112	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10030185m
Entrez Gene	18034354

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]