PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030197m
Common NameCICLE_v10030197mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 119aa    MW: 13483 Da    PI: 10.894
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030197mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.52.1e-086672689
             FAR1 26 geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                     +e  ++++vC kegk+++++    +++r+r+  r gC ak+ v k+k gk++v  +++  n +l
  Ciclev10030197m  6 KEKEDEEYVCLKEGKTRRSNVF--EHKRRRVIIRAGCGAKIAVVKSKLGKYVVGLFVEGQNRSL 67
                     4567899*********999877..9999*************************99988777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-6767IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MCALKKEKED EEYVCLKEGK TRRSNVFEHK RRRVIIRAGC GAKIAVVKSK LGKYVVGLFV  60
EGQNRSLSTA QKVHLLRSHQ SVSTAQKCLS QRFAAANIPT LKLVLLKYRM GAYKRWDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389364.11e-28protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4SDA95e-81V4SDA9_9ROSI; Uncharacterized protein
STRINGXP_006423560.18e-82(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-13FAR1-related sequence 5