PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030252m
Common NameCICLE_v10030252mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 351aa    MW: 39737.8 Da    PI: 7.9798
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030252mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-51141402128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      ppGfrFhP+d+el+v+yL++kv++++l++ + i+evd+yk++Pw+Lpk++  +e+ew+fFs+rd+ky++g+r+nra+ sgyWkatg+dk++ls+
  Ciclev10030252m  14 PPGFRFHPSDQELIVYYLQNKVTSRPLPA-SLIAEVDLYKYNPWELPKQALFGEDEWFFFSPRDRKYPNGERPNRAAGSGYWKATGTDKPILSS 106
                      9****************************.89***************88778999*************************************99 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++e+ g+kk Lvfy+gr p+g ktdW+m+eyrl
  Ciclev10030252m 107 vGSENLGVKKALVFYTGRPPRGAKTDWMMNEYRL 140
                      89999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-628167IPR003441NAC domain
PROSITE profilePS5100558.82813167IPR003441NAC domain
PfamPF023651.4E-2514140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEREHNPAAS FQFPPGFRFH PSDQELIVYY LQNKVTSRPL PASLIAEVDL YKYNPWELPK  60
QALFGEDEWF FFSPRDRKYP NGERPNRAAG SGYWKATGTD KPILSSVGSE NLGVKKALVF  120
YTGRPPRGAK TDWMMNEYRL ADTRIKPSKS KGSMRLDDWV LCRVRHKSNM PKSAWEIHGT  180
QRAEFVNYSP RTEMARPAYV NHNDDMIRDC LTKDCRLLAS ILAGQTLPPI QTVSSLSCQG  240
SNNGNSSTPA YEECAPSGVN SPLTVSSKDT LFNPLKRKPS EENWCENLLP FNKKSICDNK  300
DLDFPLSKAL PNHGIDYYSQ CQEGIYNNPS DTLIDFPELN ELAFTGKYLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-68316910170NAC domain-containing protein 19
3swm_B2e-68316910170NAC domain-containing protein 19
3swm_C2e-68316910170NAC domain-containing protein 19
3swm_D2e-68316910170NAC domain-containing protein 19
3swp_A2e-68316910170NAC domain-containing protein 19
3swp_B2e-68316910170NAC domain-containing protein 19
3swp_C2e-68316910170NAC domain-containing protein 19
3swp_D2e-68316910170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424612.10.0NAC domain-containing protein 68
TrEMBLV4SBG40.0V4SBG4_9ROSI; Uncharacterized protein
STRINGXP_006424612.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1798467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-79NAC-like, activated by AP3/PI