PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030254m
Common NameCICLE_v10030254mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 459aa    MW: 52083.4 Da    PI: 7.6976
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030254mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-18164210148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ I+++m  gR +kqc++rw+++l
  Ciclev10030254m 164 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHL 210
                      799*****************************.*************97 PP
2Myb_DNA-binding58.31.7e-18216258145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lv+a+++ G++ W+ Ia++++ gRt++++k++w+
  Ciclev10030254m 216 KDSWSEEEERILVEAHARIGNR-WAEIAKHIP-GRTENSIKNHWN 258
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.093159214IPR017930Myb domain
SuperFamilySSF466891.69E-30162257IPR009057Homeodomain-like
SMARTSM007171.5E-17163212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-27165217IPR009057Homeodomain-like
PfamPF139212.2E-20167224No hitNo description
CDDcd001676.34E-16167210No hitNo description
PROSITE profilePS5129422.685215265IPR017930Myb domain
SMARTSM007171.6E-17215263IPR001005SANT/Myb domain
CDDcd001672.30E-13218261No hitNo description
Gene3DG3DSA:1.10.10.606.1E-22218264IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEAAAARGGG GGNTSFRYQN LQQNNKPHHQ VYRPSPPLTA IDRFLWGQSN CSQQQQQQTQ  60
NIARNNKERV ISLCAFSSTS GVSTAAAYGG QHEALRPSTT TTTLEPTSFV DGFFADGTAN  120
DQSLINWSYD RIYKEGSKSA CNNNKGMIGH KRSNKKGASV ALIKGQWTDE EDRKLIKLVK  180
QYGVRKWAQI SERMAGRAGK QCRERWHNHL RPDIKKDSWS EEEERILVEA HARIGNRWAE  240
IAKHIPGRTE NSIKNHWNAT KRRQISRRKN KQNEKQKGNK NKPQSSVLQD YIRSKNSNNN  300
SPTCSTFSED PSIHDHDHFN YLLPELSEST TDDSPPLIAE TYDEELSFMQ NYFPSSNFNQ  360
PPIEQHYNDH HQHQQPTDVT NQAVQAVEPP AAATNMYSDL YLSCLLNGTT ISSSTECGHG  420
YNINDMNMYL QQQQQHGVDH EMQEMDLMEM VSSSQFFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-461622652105C-Myb DNA-Binding Domain
1msf_C6e-461622652105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425043.10.0transcription factor MYB119
TrEMBLV4RUD10.0V4RUD1_9ROSI; Uncharacterized protein
STRINGXP_006425043.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-74myb domain protein 119