PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030264m
Common NameCICLE_v10030264mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 259aa    MW: 29427.8 Da    PI: 7.1642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030264mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19e-151721792
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                     ++p +f++++g++   s   tl  ++g +W+v l  +k  g++++++GW  Fv+ + + +g fvvF++ ++s+f+ 
  Ciclev10030264m  1 MIPQEFVRKFGHE--LSAVATLAVPNGCVWRVGL--TKDEGSIWFQNGWHAFVEYHSISAGYFVVFRYRKNSSFQV 72
                     69********965..999****************..********************************99999944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.64E-15176No hitNo description
SuperFamilySSF1019361.96E-18176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.93178IPR003340B3 DNA binding domain
SMARTSM010190.075178IPR003340B3 DNA binding domain
PfamPF023624.2E-12273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-19276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-8162249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-9163246IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0048170257IPR003340B3 DNA binding domain
PROSITE profilePS508637.105219258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MIPQEFVRKF GHELSAVATL AVPNGCVWRV GLTKDEGSIW FQNGWHAFVE YHSISAGYFV  60
VFRYRKNSSF QVFILDNLTY CGIQYPSRNS CTPPKHNGYE MQGEKPRMEG IEEKNQPDNM  120
NESMQDEIDI IKLLEDMRIC VCESMKVLSV KERQAAIEAA RSIKPEKPSF LVVLQTRNMM  180
EHVVYVPATF AQKYLSGDSH VVVQDSRGGS KLATEMKSSS GWLGFFEENH VTEGDILILE  240
MIKKKNKNIL LKVSVVYT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035158.10.0B3 domain-containing transcription factor VRN1
TrEMBLV4SDL00.0V4SDL0_9ROSI; Uncharacterized protein
STRINGXP_006423680.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1853637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-35B3 family protein