PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030327m
Common NameCICLE_v10030327mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24991.5 Da    PI: 6.6835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030327mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.83.8e-201559246
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     + e+k   qvtfskRr g++ KA EL+vLC+aev +i+fs++gk+
  Ciclev10030327m 15 KLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKI 59
                     56899999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.628666IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-30665IPR002100Transcription factor, MADS-box
CDDcd002651.28E-34783No hitNo description
SuperFamilySSF554553.92E-26780IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-19828IPR002100Transcription factor, MADS-box
PfamPF003195.0E-221660IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
KKKITRGRQK IQIKKLEDKN SLQVTFSKRR SGLFSKAMEL CVLCGAEVGI IVFSPNGKIF  60
LAGHPDFDKI LNRYLDQNHS SLDEVNTIPC VQQHNKEYED AMQELEKEKK RGKMIEEEKK  120
KNKSNGRFWW QEGNIIDDMG IEELEEYLKA MKKLKGKVEM RVNEIMMNGY LAPNMNLENN  180
HRDAFGNINV NVNEDISVSG GIDGGVDFDF GFDEHFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16788283MEF2 CHIMERA
6bz1_B1e-16788283MEF2 CHIMERA
6bz1_C1e-16788283MEF2 CHIMERA
6bz1_D1e-16788283MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422729.21e-158agamous-like MADS-box protein AGL23
TrEMBLV4U9K61e-157V4U9K6_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006422729.11e-158(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15814714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-34AGAMOUS-like 62