PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030461m
Common NameCICLE_v10030461mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 154aa    MW: 17202.1 Da    PI: 11.315
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030461mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-1487131347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E++l++ + ++ G+g+W++I+r + k+Rt+ q+ s+ +ky
  Ciclev10030461m  87 PWTEDEHKLFLLGLQKVGKGDWRRISRNFVKTRTPTQVASHARKY 131
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.10180136IPR017930Myb domain
SuperFamilySSF466894.74E-1682137IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1683134IPR006447Myb domain, plants
SMARTSM007176.4E-1184134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-1286131IPR009057Homeodomain-like
CDDcd001677.05E-1187132No hitNo description
PfamPF002496.8E-1287131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSGTGDSSAV NGGGGVILLF GIRVVVDSMR KSVSLNNLSQ YEQPQGYSSN RNNNNKDDVA  60
AAGYASADDA VHNNSSRASR EQKRGVPWTE DEHKLFLLGL QKVGKGDWRR ISRNFVKTRT  120
PTQVASHARK YFLRRSNLNR RRRRSSLFDI TTDS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.9381e-105abscission zone| leaf| vegetative tissue
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431332.21e-110transcription factor MYB1R1, partial
SwissprotQ2V9B01e-56MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLV4SUX41e-108V4SUX4_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006431332.11e-109(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.22e-44MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]