PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030636m
Common NameCICLE_v10030636mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 974aa    MW: 108670 Da    PI: 5.5367
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030636mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.82.7e-55131264116
             CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                      e ++rwlk+ e++ iL+n++k+elt+e++++p+sgsl+L+n++++r+frkDG++w+kkkdg++v E+he+LKvg+ e+l+cyYah+e+np+fqr
  Ciclev10030636m  13 EaQTRWLKPAEVLFILQNYDKYELTQEPPQKPNSGSLFLFNKRVLRFFRKDGHNWRKKKDGRAVGEAHERLKVGNAEALNCYYAHGEQNPNFQR 106
                      5599****************************************************************************************** PP

             CG-1  97 rcywlLeeelekivlvhyle 116
                      r+yw+L+ ++e+ivlvhy+e
  Ciclev10030636m 107 RSYWMLDPAYEHIVLVHYRE 126
                      ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.6547133IPR005559CG-1 DNA-binding domain
SMARTSM010763.7E-7810128IPR005559CG-1 DNA-binding domain
PfamPF038596.3E-4913126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.7E-8411498IPR013783Immunoglobulin-like fold
PfamPF018334.0E-8412489IPR002909IPT domain
SuperFamilySSF812964.34E-17412495IPR014756Immunoglobulin E-set
CDDcd001022.55E-5412495No hitNo description
Gene3DG3DSA:1.25.40.202.2E-15605701IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.626607699IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.38E-16609701IPR020683Ankyrin repeat-containing domain
CDDcd002046.40E-10612699No hitNo description
PfamPF127962.5E-9623700IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.381640672IPR002110Ankyrin repeat
SMARTSM002484.4E-4640669IPR002110Ankyrin repeat
SMARTSM00248750679708IPR002110Ankyrin repeat
SMARTSM0001515757779IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041758787IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.02E-7808862IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.23815837IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206816845IPR000048IQ motif, EF-hand binding site
PfamPF006120.014818836IPR000048IQ motif, EF-hand binding site
SMARTSM000159.1E-4838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.285839864IPR000048IQ motif, EF-hand binding site
PfamPF006125.4E-5841860IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MQGGYDVDIL FREAQTRWLK PAEVLFILQN YDKYELTQEP PQKPNSGSLF LFNKRVLRFF  60
RKDGHNWRKK KDGRAVGEAH ERLKVGNAEA LNCYYAHGEQ NPNFQRRSYW MLDPAYEHIV  120
LVHYREITEG RPSPGSVVVS PGASSTFTLS PASYVTPNPG PTSLKSDFYE PYQSISSPSS  180
IEVTSEMASK DNAVDSKGGS TSSEAEVSQA LRKLKEQLSL NDDMFEEIDS LSRQDLDSES  240
KISQQDQFRA FLQSPEYVVQ EEYKGGHAGF QDQSNNLVMH QDAGYDGKHL QQSYGHGYAV  300
GSKGPLSWED MLESCENASG VESQDKPLSS CWREPVEEQE LSCWPNFNGS IEHPSLLMPQ  360
EVKKFEIPEY SSLIGTQQTN SNYTTIFDQD HIGVPLEADL RLTVAQKQKF AIREISPDWG  420
YANESTKVII VGSFLCDPSE SAWLCMFGDT EVPLQIIQEG VIRCEAPPRL PGKVTLCITS  480
GNRESCSEVK EFNYRVKPNS YDNWSQKEAT KSHDELLLLV RFVQMLLSDS SVNKEEGVEL  540
GYHELRGMKA DDDLWGQVID SLLVGSGNSL DTIDWLLQEV LKDKLQQWLS SKSLRESDQP  600
GCSLSKKEQG IIHMVAGLGF EWALNPILSC GVSINFRDIN GWTALHWAAR FGREKMVAAL  660
LASGASAGAV TDPNPLDPTG RTPAFIAASS GHKGLAGYLS EVALTSHLSS LTLEESELSK  720
NSAEVQAEIT VNSISNGNIS STEDQLSLKD TLAAVRNAAQ AAARIQSAFR AHSFRKRQQR  780
DLAAIGASLD EYGINPDDIP GLSAISKLAF RNARDHNSAA LSIQKKYRGW KGRKDYLAIR  840
QKVVKIQAHV RGYQVRKKYK VIWAVGVLDK VILRWRRKGV GLRGFRPEIE SNDESDDEDI  900
LKVFRRQKVD ATIDEAVSRV LSMVDSPTAR NQYRRMLERY RQAKAELGET SEAAALSAGD  960
AVDMDDESTY RFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438003.10.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLV4STS80.0V4STS8_9ROSI; Uncharacterized protein
STRINGXP_006438003.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]