PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031052m
Common NameCICLE_v10031052mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 585aa    MW: 65413.9 Da    PI: 6.124
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031052mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.63.1e-24200253155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Ciclev10031052m 200 KARVVWSIDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253
                      68*******************.9*******************************8 PP
2Response_reg77.25.9e-26201281109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+ + +++l+++l+k  y ev+++  +++al ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  Ciclev10031052m  20 VLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQH 111
                      89*********************.***************999999**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ ++el++
  Ciclev10031052m 112 GACDYLLKPIRMKELRN 128
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.3E-4317150No hitNo description
SuperFamilySSF521721.04E-3417146IPR011006CheY-like superfamily
SMARTSM004485.6E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.21319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2320129IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.44E-2921134No hitNo description
SuperFamilySSF466897.88E-17198257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-27198258IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-21200253IPR006447Myb domain, plants
PfamPF002496.3E-7202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MENGFSSPRN DTFNPAGLRV LVVDDDLAWL KILEKMLKKC SYEVTTCGLA RDALSLLRER  60
KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKRIHE VRDIENIEGF ESIHMTRSGS DQSVDGPLLT GEDLTSVRKR  180
KDAENRHDDR DCGDASSTKK ARVVWSIDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT  240
RENVASHLQK YRLYLTRLQK DELKTSVGGI KQKDSPSKDS AASFGIQNSI TVHHHNDVSN  300
GGYRFSGSNS VVQNVDAKSL EGDVKGIDTI PVTGHKRVLT VDIPNSHKAR CSQIGFSGSF  360
VPGHSDVNFT SLDSAIPTQP WSEVSETQFQ HEHKPLRLEN DFTQLPLPGP RHHIQVDCIQ  420
SGPSAISKPS VVDKDNLKPF DCTYKSNHPN AIPIGSAVDT FPVQTTSPIV NHQPFEPIAR  480
TTSSMKSQGL NLSCIPDLEA AQRNINWGVG SSLTSLDEDL QLCWLQGDCF AMNLGLQDIN  540
FSEYNDPALN SEVPFHLYDT MRFDYEHYYD PTECPIIDQG LFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17196258163ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438147.10.0two-component response regulator ARR11 isoform X1
SwissprotQ9FXD61e-146ARR11_ARATH; Two-component response regulator ARR11
TrEMBLV4TDL10.0V4TDL1_9ROSI; Uncharacterized protein
STRINGXP_006438147.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-149response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]