PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031120m
Common NameCICLE_v10031120mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 560aa    MW: 62348.4 Da    PI: 6.2959
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031120mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14e-28317371156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Ciclev10031120m 317 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                      5689*****************.********************************96 PP
2Response_reg26.33.8e-10201261109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+ d + + +  l+  le  +y +v ++ +  eal  + +k   +++ ++ +  ++ dG+  +k +++++ +lp i+ +     +++ +++ +
  Ciclev10031120m  20 VLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPenFHVAIVEVTTSNTDGS--FKFLETAK-DLPTIITSNIHCLSTMMKCIAL 109
                      7889999999999999*******.***************666556***************7..67777766.899999998888********** PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga +fl Kp ++++l++
  Ciclev10031120m 110 GAVEFLRKPLSEDKLRN 126
                      *************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.4E-1516168No hitNo description
PROSITE profilePS5011020.02719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-620126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.92E-821131No hitNo description
PROSITE profilePS5129415.114314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-27315374IPR009057Homeodomain-like
SuperFamilySSF466891.43E-18316374IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-25317371IPR006447Myb domain, plants
PfamPF002491.0E-8320369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVCTANDLSA WKDFPKGLRV LLLDQDSSAA AELKFKLEAM DYIVSTFYNE NEALSAFSDK  60
PENFHVAIVE VTTSNTDGSF KFLETAKDLP TIITSNIHCL STMMKCIALG AVEFLRKPLS  120
EDKLRNLWQH VVHKAFNAGG SALSDSIKPV KESVVSMLHL KLENGESKNE KSENTEYVLV  180
PQQSDNEQSE PNDKYPAPST PQLKQGGRLL DDIDCQDNTN FSTEKESAEQ DGESKFVETT  240
CGNSIAEGTL QEDKPQRPRE TIVKEEHDPT NGSKTECNML PLPYEKDNLK GSNCVIENPS  300
KASGLQNSCG NKANRKKMKV DWTPELHKKF VQAVEQLGVD QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HRRHILPKED DRKWPHARDQ MLRNYYPHKP IMAFPPYHSN HLVPTGPVYP  420
VWGAPSNHLA AVQMWAPPGY PPWQQAESWN WKPYPGMPAD AWGCPVMPLP NGSYSSFPQG  480
ASGYHNSGVD DNSYAMPQNS VDLHPAEEVI DKVVKEAISK PWLPLPLGLK PPSADSVLAE  540
LSRQGISTIP PRINGSHPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A9e-17322371655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436789.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485404.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485405.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-155APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLV4VCE50.0V4VCE5_9ROSI; Uncharacterized protein
STRINGXP_006485404.10.0(Citrus sinensis)
STRINGXP_006436789.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-157ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]