PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031224m
Common NameCICLE_v10031224mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 527aa    MW: 56691.1 Da    PI: 7.7502
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031224mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.51.5e-1786202187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............................rergferspkqCkekwenlnkrykk 63 
                      +W++  + +L+ea++e+ ++l+rg+l++ +Weev++++                               +  +  +s +qCk+k++nl+kryk 
  Ciclev10031224m  86 EWSDTAIACLLEAYTEKLNQLNRGNLRGRDWEEVAEVVsercgggggnnnnnendnninnnnnssgekrEVVKAAKSVEQCKNKIDNLKKRYKV 179
                      5*****************************************************************9755567789****************** PP

         trihelix  64 ikegekkrtsessstcpyfdqlea 87 
                      + +++++  s  +s++ +f+q+ea
  Ciclev10031224m 180 EVQRMGSSGS-GTSNWLWFKQIEA 202
                      ******9755.556*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1584203No hitNo description
Gene3DG3DSA:3.40.1160.101.9E-65279519IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.25286520IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.13E-52287519IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.69E-109289520No hitNo description
PfamPF006962.2E-20290499IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSSQDYPLIP ESHAPTRIPQ TTDSTAAANY YAHSAFTTNE DSDADKSGSG SGSGSGPKRN  60
PYYYKKQKTG ETATDYRVDY RKDREEWSDT AIACLLEAYT EKLNQLNRGN LRGRDWEEVA  120
EVVSERCGGG GGNNNNNEND NNINNNNNSS GEKREVVKAA KSVEQCKNKI DNLKKRYKVE  180
VQRMGSSGSG TSNWLWFKQI EAIMGTINNN HNNAISSSNY GLVNKSTGGG GSTEIVERNG  240
GAAATAMASA SPSPVAVSPF SRQARRYTPS TSTVTYNLKS KPQQNLKWRR VVFKISGSAL  300
VGNCHNIDPK VVMQIAREVA SACRLGMEVA IVLGGRNFFC GDSWLSDTGL DRPTAYQIGM  360
MATVMNSILL QSALEKLEIK TRVQSAFALP EVDEPYSRQR AIRHLEKGRV VIFGGIGAGT  420
GNPLFTTDAA AALRASELNA DAMVKGVSVN GIYDSHSGNG HVVPEHISYR EAVSGNFTSM  480
DTMAITYCEE NGIPVVVFNL LEPGNISSAL CGGQVGTLID QSGGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-602805191239Uridylate kinase
3ek5_B3e-602805191239Uridylate kinase
3ek5_C3e-602805191239Uridylate kinase
3ek5_D3e-602805191239Uridylate kinase
3ek5_E3e-602805191239Uridylate kinase
3ek5_F3e-602805191239Uridylate kinase
3ek6_A3e-602805191239Uridylate kinase
3ek6_B3e-602805191239Uridylate kinase
3ek6_C3e-602805191239Uridylate kinase
3ek6_D3e-602805191239Uridylate kinase
3ek6_E3e-602805191239Uridylate kinase
3ek6_F3e-602805191239Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.82020.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436611.10.0uncharacterized protein LOC18045004
TrEMBLV4TJA00.0V4TJA0_9ROSI; Uncharacterized protein
STRINGXP_006436611.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2300244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-150Trihelix family protein