PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031295m
Common NameCICLE_v10031295mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 507aa    MW: 59218.9 Da    PI: 6.8041
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031295mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.73.6e-2996181187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l+L+e+r+++++++++++ kkplW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Ciclev10031295m  96 RWPRQETLTLLEIRSRLDSKFKEANHKKPLWDEVSRIMaEEHGYHRSEKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 181
                      8*************************************999*****************************98..55667*******85 PP
2trihelix491.6e-15388460172
         trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                      rW + e+l L+++ +++e+++++ g +++  Wee+++km++ g+ rs+++ kekwen++++y    + ++ ++
  Ciclev10031295m 388 RWNEPETLNLMQLITSLETKFEQsGYSNESIWEEIAAKMASFGYYRSAIEFKEKWENMQMYYHHHGHDQIAKQ 460
                      8********************974679***********************************98887777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.17889154IPR017877Myb-like domain
SMARTSM007170.03393156IPR001005SANT/Myb domain
PfamPF138376.5E-2196182No hitNo description
CDDcd122034.33E-1996161No hitNo description
SMARTSM007172.5385448IPR001005SANT/Myb domain
CDDcd122031.15E-15388449No hitNo description
PROSITE profilePS500906.632388446IPR017877Myb-like domain
PfamPF138377.4E-13388451No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MADQYGHQLP DLGRLATGRT HFPVNQETPQ PYFFNRSINN ETVMLAAGEM VLPAAGGLVR  60
FGHHHDFAAA ATNHPTAVVD MESSGWGNTN ESGNGRWPRQ ETLTLLEIRS RLDSKFKEAN  120
HKKPLWDEVS RIMAEEHGYH RSEKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE  180
ALYGETSNNQ NSVSELSPLD QNTTNFLHQT PNQENQENQE ASNHLEQKLS DQSLSFSNTS  240
EFETASSGNN NDEDLSAIAF MMNQKSMEKH NKMNESRSGK RDKRSSNWKG KVKEFVDAQM  300
RELMESQEAW MERMLKTIED REKERLCKEE EWRKQEMARF DKVHEFWARE RAWVEGRDNA  360
LMEALKKVTG RREPEVVSSS SLIMHDCRWN EPETLNLMQL ITSLETKFEQ SGYSNESIWE  420
EIAAKMASFG YYRSAIEFKE KWENMQMYYH HHGHDQIAKQ KLERMELFLP SNNPYAGTQG  480
HQSCFHIQQI NEGQQQFWEK GKTKRN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}.
UniprotTISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840635e-43AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBankAC2144195e-43AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436672.10.0trihelix transcription factor PTL
RefseqXP_006492187.10.0trihelix transcription factor PTL-like
SwissprotQ9LZS04e-96PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2H5PJY70.0A0A2H5PJY7_CITUN; Uncharacterized protein
TrEMBLV4T9I20.0V4T9I2_9ROSI; Uncharacterized protein
STRINGXP_006492187.10.0(Citrus sinensis)
STRINGXP_006436672.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-97Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]