PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031389m
Common NameCICLE_v10031389mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 481aa    MW: 53863.9 Da    PI: 6.2056
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031389mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS464.27.3e-142494751374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA++v++g+ e+a+  L+++s+laspdgd++qR+aayfteALa r+++ +++l kal++++ s  + +ee+ ++klf+e++P+lk+s
  Ciclev10031389m  49 LIHLLVACANHVAAGSVENANIGLEQISHLASPDGDTVQRIAAYFTEALADRMLKAWPGLHKALNSTKIS--SITEEIIVQKLFFELCPFLKLS 140
                      689*************************************************************999998..59******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++++NqaI+ea+ege++vHiiD++  +++QW++Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ ++++le+
  Ciclev10031389m 141 YVITNQAIVEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-IVSKLEN 229
                      *******************************************************....9**************************.7999*** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll.................................................................des 217
                      ++le+L  k+gEalaV++vlq+hrll                                                                 + s
  Ciclev10031389m 230 VDLESL-RKTGEALAVSSVLQMHRLLatddemprrtspsasrtsssshlqrvlhmnrrtlgewlekdsvlmfspspdsasasasastplslAAS 322
                      ******.589*************************************************************************99664333333 PP

             GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                           +  ++L++++slsPkvvvv+eqe++hn++s++er++eal++y+a+fd+le++++r+s er+kvE++l+g+ei+n++aceg errerhe+
  Ciclev10031389m 323 P----KMGSFLNALWSLSPKVVVVTEQESNHNGPSLMERVMEALNFYAAMFDCLESTMSRASIERQKVEKMLFGEEIKNIIACEGIERRERHEK 412
                      3....5677************************************************************************************* PP

             GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      lekW  rle aGF+ vpls++ + qa++ll+ ++ dgy+++ee+g+lv++W+dr+L+svSaWr
  Ciclev10031389m 413 LEKWILRLELAGFGRVPLSYHGMLQARRLLQSYGYDGYKIKEENGCLVICWQDRTLFSVSAWR 475
                      **************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.1623455IPR005202Transcription factor GRAS
PfamPF035142.5E-13949475IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAGMVQEDGA SSASSSPLQF FSMMSLSPAF GSPYPWLREL KSEERGLCLI HLLVACANHV  60
AAGSVENANI GLEQISHLAS PDGDTVQRIA AYFTEALADR MLKAWPGLHK ALNSTKISSI  120
TEEIIVQKLF FELCPFLKLS YVITNQAIVE AMEGEKMVHI IDLNSFEPAQ WINLLQTLSA  180
RPEGPPHLRI TGIHEQKEVL EQMALRLTEE AEKLDIPFQF NPIVSKLENV DLESLRKTGE  240
ALAVSSVLQM HRLLATDDEM PRRTSPSASR TSSSSHLQRV LHMNRRTLGE WLEKDSVLMF  300
SPSPDSASAS ASASTPLSLA ASPKMGSFLN ALWSLSPKVV VVTEQESNHN GPSLMERVME  360
ALNFYAAMFD CLESTMSRAS IERQKVEKML FGEEIKNIIA CEGIERRERH EKLEKWILRL  420
ELAGFGRVPL SYHGMLQARR LLQSYGYDGY KIKEENGCLV ICWQDRTLFS VSAWRFRRYD  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-39324771380Protein SCARECROW
5b3h_D2e-39324771380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438891.10.0scarecrow-like protein 3
RefseqXP_024041784.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2H5N9G00.0A0A2H5N9G0_CITUN; Uncharacterized protein
TrEMBLV4TQJ90.0V4TQJ9_9ROSI; Uncharacterized protein
STRINGXP_006438891.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]