PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031406m
Common NameCICLE_v10031147mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 477aa    MW: 52338.6 Da    PI: 4.4062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031406mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.11.1e-2536565128
              NAM  65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      dkky +g+r+nrat++gyWk+tgkd++v++ ++++vg+kktLv++ grap+ge+t+Wvmheyrl
  Ciclev10031406m   3 DKKYGNGSRTNRATEKGYWKTTGKDRPVHH-NTRTVGMKKTLVYHMGRAPHGERTNWVMHEYRL 65 
                      799***************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.676188IPR003441NAC domain
SuperFamilySSF1019416.41E-33388IPR003441NAC domain
PfamPF023651.5E-111065IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLDKKYGNGS RTNRATEKGY WKTTGKDRPV HHNTRTVGMK KTLVYHMGRA PHGERTNWVM  60
HEYRLTDDDL EKAGVAQDAF VLCRIFQKSG SGPKNGEQYG APFIEEEWED DEVVDAALVP  120
GHDVVADELV VSDDAYFETN DLDQNIDVAN QSENAPRHLN FYHGESSNHV EHSRDLSPDN  180
QKPMIGVGAT QHNSELMDAR PVKDEYIDSS NGVNAGGVNY FLNEPYLDAT DNPQFSDGLY  240
LEANDLSSTV EADSQGFDMV EEYLNFFDAN DDNSEYLTFD ASEILGSGDN NSDQVPLTTE  300
VTEVTDQMSM AGQHQVEVHG NDVASTSEQK PDIVKSESDV KYPFLKQASQ MLGNVAAAPA  360
FASEFPTKDA ALRLNSLAHP SSSVHVTAGM IRIRNITLSG SGLDWSVGKN GDMNIVFSFD  420
LSQNVISPSH TSFEPAGNIF SGKTGSVVFR SLWLLLFLWI VILSVGFKIG ACVSAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-2439480171NO APICAL MERISTEM PROTEIN
1ut4_B3e-2439480171NO APICAL MERISTEM PROTEIN
1ut7_A3e-2439480171NO APICAL MERISTEM PROTEIN
1ut7_B3e-2439480171NO APICAL MERISTEM PROTEIN
3swm_A2e-2439483174NAC domain-containing protein 19
3swm_B2e-2439483174NAC domain-containing protein 19
3swm_C2e-2439483174NAC domain-containing protein 19
3swm_D2e-2439483174NAC domain-containing protein 19
3swp_A2e-2439483174NAC domain-containing protein 19
3swp_B2e-2439483174NAC domain-containing protein 19
3swp_C2e-2439483174NAC domain-containing protein 19
3swp_D2e-2439483174NAC domain-containing protein 19
4dul_A3e-2439480171NAC domain-containing protein 19
4dul_B3e-2439480171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.206840.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436535.10.0NAC domain-containing protein 78 isoform X2
RefseqXP_006485308.10.0NAC domain-containing protein 78 isoform X2
TrEMBLV4VBT10.0V4VBT1_9ROSI; Uncharacterized protein
STRINGXP_006485307.10.0(Citrus sinensis)
STRINGXP_006436536.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-106NAC domain containing protein 53