PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031463m
Common NameCICLE_v10031463mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 463aa    MW: 49989 Da    PI: 5.512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031463mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-164994147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v q+G ++W  Iar ++ gR++k+c++rw + 
  Ciclev10031463m 49 KGPWSPEEDAVLSRLVSQFGARNWGMIARGIP-GRSGKSCRLRWCNQ 94
                     79******************************.***********985 PP
2Myb_DNA-binding56.28.1e-18101145147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd++++ a++ +G++ W+ Iar ++ gRt++ +k++w++ 
  Ciclev10031463m 101 RKPFTDEEDQIIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 145
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.7494495IPR017930Myb domain
SuperFamilySSF466893.36E-3046142IPR009057Homeodomain-like
SMARTSM007178.1E-144897IPR001005SANT/Myb domain
PfamPF002491.0E-144994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2550102IPR009057Homeodomain-like
CDDcd001672.49E-135193No hitNo description
PROSITE profilePS5129425.51196150IPR017930Myb domain
SMARTSM007178.1E-17100148IPR001005SANT/Myb domain
PfamPF002492.2E-15101145IPR001005SANT/Myb domain
CDDcd001671.33E-12103146No hitNo description
Gene3DG3DSA:1.10.10.606.7E-24103149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSEKKEDSVS KSQNDDVDGA IVVEDSSEPG GGGDGGGGGG GGSSSSRVKG PWSPEEDAVL  60
SRLVSQFGAR NWGMIARGIP GRSGKSCRLR WCNQLDPCLK RKPFTDEEDQ IIISAHAVHG  120
NKWAVIARLL PGRTDNAIKN HWNSTLRRRY TDLGRFKPAL GDMTEDGSLD RTKGSSEETL  180
SVGDVNPLKP LEGRDVTMDD RPNRLEDMAQ TNGGEFTAVP KQHSTFPCPV GDINSCKLPE  240
GRDVTMNDTP KMHEDRAERM EVEFAVGPKP HPTLPRPVAR VSAFSLYNSP SGLTPCSGIP  300
RAVPTQGPLV QAPRLDLGIC KFLEDVCSEP IIPSQCGYGC CASPTGHHLH SSLLGPEFVD  360
YEEPPAFSSH ELISIATDLN NIAWIKSGLE NSNVGVPGNA ASERMTQGTS SDPRMEISEQ  420
SVKRDMRFEE GRNKLTGMMT DVLPAQVPRQ SFAMRAQVEG LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-38481496107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435568.10.0transcription factor MYB1
TrEMBLV4SM130.0V4SM13_9ROSI; Uncharacterized protein
STRINGXP_006435568.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-107myb domain protein 109